Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_M17
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-16|AAK29860.1| 233|Caenorhabditis elegans Hypothetical p... 127 1e-29
AF143147-1|AAD37862.1| 233|Caenorhabditis elegans R151.8A prote... 127 1e-29
AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical ... 33 0.24
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 31 0.98
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 31 0.98
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr... 30 2.3
U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 29 5.2
U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 29 5.2
AL032626-5|CAA21525.1| 366|Caenorhabditis elegans Hypothetical ... 28 6.9
>U00036-16|AAK29860.1| 233|Caenorhabditis elegans Hypothetical
protein R151.10 protein.
Length = 233
Score = 127 bits (306), Expect = 1e-29
Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 233 VTHVLFDMDGLILNTEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDL 412
VTHV+FD DGL+++TE YT ++ +YG FT +LK R MG++ E +I L +
Sbjct: 5 VTHVIFDFDGLLVDTESAYTEANMELLRKYGHVFTMDLKRRQMGKRHDESIRWLINELKI 64
Query: 413 P--LTIEDFVSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTL 586
+T E++ + ++ E+F +S +PG +KL+ HL +P+ L T S ++ K
Sbjct: 65 GDLVTPEEYSRQYDELLIEMFKRSPAMPGAEKLVRHLLHTGVPVALCTGSCSRTFPTKLD 124
Query: 587 KHQDLFDLFSHKTLGSSDPDVKRGKPHPDIFIVAANKFLDKPD-LEKCLVFED 742
H+D ++ + L DP+VK GKPHPD F+V +F P+ +K LVFED
Sbjct: 125 NHKDWVNMIKLQVLSGDDPEVKHGKPHPDPFLVTMKRFPQVPESADKVLVFED 177
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +1
Query: 721 KVSRFRRSINGVKAARAAGMQVVMVPD 801
KV F S NGV +A AGMQ VMVP+
Sbjct: 171 KVLVFEDSYNGVLSALDAGMQCVMVPE 197
>AF143147-1|AAD37862.1| 233|Caenorhabditis elegans R151.8A protein
protein.
Length = 233
Score = 127 bits (306), Expect = 1e-29
Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 233 VTHVLFDMDGLILNTEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDL 412
VTHV+FD DGL+++TE YT ++ +YG FT +LK R MG++ E +I L +
Sbjct: 5 VTHVIFDFDGLLVDTESAYTEANMELLRKYGHVFTMDLKRRQMGKRHDESIRWLINELKI 64
Query: 413 P--LTIEDFVSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTL 586
+T E++ + ++ E+F +S +PG +KL+ HL +P+ L T S ++ K
Sbjct: 65 GDLVTPEEYSRQYDELLIEMFKRSPAMPGAEKLVRHLLHTGVPVALCTGSCSRTFPTKLD 124
Query: 587 KHQDLFDLFSHKTLGSSDPDVKRGKPHPDIFIVAANKFLDKPD-LEKCLVFED 742
H+D ++ + L DP+VK GKPHPD F+V +F P+ +K LVFED
Sbjct: 125 NHKDWVNMIKLQVLSGDDPEVKHGKPHPDPFLVTMKRFPQVPESADKVLVFED 177
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +1
Query: 721 KVSRFRRSINGVKAARAAGMQVVMVPD 801
KV F S NGV +A AGMQ VMVP+
Sbjct: 171 KVLVFEDSYNGVLSALDAGMQCVMVPE 197
>AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical
protein R02F11.4 protein.
Length = 630
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Frame = +2
Query: 461 ELFPQSEILPG----VKKLIYHLNQHNIPMGLATSSSKESYELKTLKHQDLFDLFSHKTL 628
+LFP+ +I+ + K I N + + + LA + KE+ +L ++ + DL ++
Sbjct: 96 KLFPKCQIIDARDCQINKFIADFNYNLLELHLARNQLKETNQLGRFENLKILDLSNNLI- 154
Query: 629 GSSDPDVKRGKPHPDIFIVAANKFLDKPDLEKCLVFE 739
+P V + +I ++ N + PDL KC+ +
Sbjct: 155 ---EPPVSFSLKNLEILNLSGNFLNEIPDLSKCVALQ 188
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 158 VPFTQVYWYFSYFIKIFENMTTFKPVTHVLFDMDGLILNTEDLYT 292
+P V ++ +KI EN TT K T + D+D LIL +DL++
Sbjct: 1558 LPTNPVCSFWKLVVKI-ENSTTDKEKTELCEDLDKLILRKDDLFS 1601
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 158 VPFTQVYWYFSYFIKIFENMTTFKPVTHVLFDMDGLILNTEDLYT 292
+P V ++ +KI EN TT K T + D+D LIL +DL++
Sbjct: 1558 LPTNPVCSFWKLVVKI-ENSTTDKEKTELCEDLDKLILRKDDLFS 1601
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 158 VPFTQVYWYFSYFIKIFENMTTFKPVTHVLFDMDGLILNTEDLYT 292
+P V ++ +KI EN TT K T + D+D LIL +DL++
Sbjct: 1558 LPTNPVCSFWKLVVKI-ENSTTDKEKTELCEDLDKLILRKDDLFS 1601
>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical
protein C34G6.1 protein.
Length = 1768
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 563 PYYCSLLNPL--ECCVDLDDK*VSLHQAVFRSEGKALRRFDVS 441
PY +LN L C+D DD V+L ++ +A R FDV+
Sbjct: 334 PYLEDILNALFPNACLDPDDTTVTLSTQAIKNHSEAFRCFDVA 376
>U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein.
Length = 777
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 726 HFSKSGLSRNLLAATI-NISGCGFPLFTSGSEEPKVLCENKSN-KS*CLSVFNS 571
H+S G RN + I GCG P F SEE + C KS CLS S
Sbjct: 548 HYSPEGCHRNCFQLKVLEICGCGDPRFPLPSEEHR-HCNAKSKIDRQCLSNLTS 600
>U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated
protein 8 protein.
Length = 777
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 726 HFSKSGLSRNLLAATI-NISGCGFPLFTSGSEEPKVLCENKSN-KS*CLSVFNS 571
H+S G RN + I GCG P F SEE + C KS CLS S
Sbjct: 548 HYSPEGCHRNCFQLKVLEICGCGDPRFPLPSEEHR-HCNAKSKIDRQCLSNLTS 600
>AL032626-5|CAA21525.1| 366|Caenorhabditis elegans Hypothetical
protein Y37D8A.5 protein.
Length = 366
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 473 QSEILPGVKKLIYHLNQHNIPMGLATSSSKESY 571
QS+I P ++L+ L + P+GLATSS E +
Sbjct: 135 QSQIQPQTQELLSALQETQQPVGLATSSVVEIF 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,485,192
Number of Sequences: 27780
Number of extensions: 360101
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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