Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M16
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    28   7.5  
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    28   9.9  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    28   9.9  

>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 668 QCFFEVLLKYFLSVAEALLCFAK*IWSSRCWSFSPYIP-HSH 546
           QCFF+  L Y+ ++  +  CF+  ++  R +SF P    H+H
Sbjct: 99  QCFFDGNLYYYTNLFSSFCCFS--LFLDRLFSFKPRSSYHNH 138


>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 470  RSGFRSSI*VHLNGSFRFIEANRYFGNTRRWRWCWYLIIFPLFWRIANISFFMFFPISVP 291
            R G R++   HL  +F  + AN        W+ C+  ++FPL  ++    F    PI + 
Sbjct: 1580 RRGVRAAALTHLQRAF--LPANMATLGAAEWQSCFGEVLFPLLTKLLE-PFSQMDPIGME 1636

Query: 290  GAR-RTL 273
              R RTL
Sbjct: 1637 DTRVRTL 1643


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 470  RSGFRSSI*VHLNGSFRFIEANRYFGNTRRWRWCWYLIIFPLFWRIANISFFMFFPISVP 291
            R G R++   HL  +F  + AN        W+ C+  ++FPL  ++    F    PI + 
Sbjct: 1580 RRGVRAAALTHLQRAF--LPANMATLGAAEWQSCFGEVLFPLLTKLLE-PFSQMDPIGME 1636

Query: 290  GAR-RTL 273
              R RTL
Sbjct: 1637 DTRVRTL 1643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,431,606
Number of Sequences: 27780
Number of extensions: 277116
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)