Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M15
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             167   7e-42
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            30   1.1  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.5  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      28   4.6  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   6.1  
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)                 27   8.0  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 27   8.0  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  167 bits (405), Expect = 7e-42
 Identities = 79/95 (83%), Positives = 88/95 (92%), Gaps = 2/95 (2%)
 Frame = +2

Query: 203 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 376
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 377 HKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 481
           HKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 172 YSPHQDHSYFSQCALTR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 321
           Y P   +SY + CA T+   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 202 SQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 321
           S C     GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 137 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 238
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -3

Query: 502 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLK 362
           FY  L L V D    L  G+D    DLF   R    VD+SLV   +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 277  GPSPHANQDPAYHHP 321
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
          Length = 198

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 115 GSRCSVRQRHRETPGRGLPYSPHQDHSYFSQCALTREGL 231
           GSR   R RHR  PGR  P  P    S+ ++ A  R GL
Sbjct: 2   GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 76  KSCLSRPEFNKQHGSRCS-VRQRHRETPGRGLPYSPHQ 186
           +S ++   +  +H S  S V+ R+R   G+G+ Y PHQ
Sbjct: 744 RSQINVTRYRPRHPSSTSTVKYRYRLWTGKGVDYQPHQ 781


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,231,205
Number of Sequences: 59808
Number of extensions: 360873
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)