Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M14
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    27   3.6  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   6.3  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   8.3  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.3  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 200 QELFNLRIRYWKHTSDTIVQYLVASLLLNL 111
           ++LFNL +R WK+ S ++    +  L+L++
Sbjct: 183 EDLFNLSVRTWKNPSASVHDKALLYLILSI 212


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -1

Query: 645 CVSSNVLVLWDTXNKTVPRIHRQPVRCTPPVVAANFISNDFSGERF 508
           CV + V    +   K + RIH +P++ +  +   +FI +   G  +
Sbjct: 178 CVGNMVPNEMEALQKCIERIHARPIQTSVRIDTTHFICSSTGGPEY 223


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +1

Query: 397 ELTANHSEIAKN----GLRRLWGVPDT--LAYVGHLFRMEIPKEAFSGKVVAYKVRSD 552
           EL     E AKN    G   + G  D+  L Y  HLF+   PKE +     A  VR+D
Sbjct: 17  ELLRRQKEAAKNSSTNGSVNIEGTQDSNDLQYNAHLFKSSNPKEEYDS---AIDVRND 71


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 612 TXNKTVPRIHRQPVRCTPPVVAANFISNDFSGERFLGDFHAEQMSYIGQRV 460
           T  +++P+I  +  + T PV+ ++F   D   ER LGD   +   Y+   V
Sbjct: 354 TSYESLPKIQLE--QNTAPVIESSFEQLDSELERILGDTLFDSFPYVEPNV 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,345
Number of Sequences: 5004
Number of extensions: 57811
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)