Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M14
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    33   0.23 
02_02_0632 - 12413660-12413677,12413839-12413870,12414377-124144...    30   2.1  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    28   6.5  
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533...    28   6.5  
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802...    28   8.6  

>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 540 SSQRPREAYTELAGGGFEARSYXRYPTVPGHWNSHIHRHRSRNYQRTH 683
           +S   R  Y E  GGG+E+ S+ +Y  +P H + H H H     Q  H
Sbjct: 34  ASAAARSRY-EYGGGGYESHSHHQY-HLPDHHHHHHHHHPPPRVQHHH 79


>02_02_0632 -
           12413660-12413677,12413839-12413870,12414377-12414494,
           12414794-12414860,12416098-12416237,12416378-12416470,
           12416581-12416643,12418070-12418120,12419508-12419606,
           12419876-12420012,12420121-12420219,12420346-12420523
          Length = 364

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 516 LRKSRCL*SSQRPREAYTELAGGGFEARSYXRYPTVPGHWNSHIHRHRSRNYQR 677
           LR+ R +    RP++A  E      E       P V GH     H HRSR + R
Sbjct: 40  LRQCRAVPQPLRPQQAQGEEGKQVLEVLGVHVEPAVLGHGGRGDHGHRSRQWSR 93


>11_02_0051 +
           7776312-7780228,7780627-7780695,7781920-7781979,
           7782225-7782324,7782720-7782801,7782928-7782940,
           7783621-7783681
          Length = 1433

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 219 LQYKQIIKMSL*ELLGALCVSVEDGVRKVHRVRATLAVSSCSQS 350
           L+Y  I+K S+ EL G+LC        +VHR    L    C+ S
Sbjct: 615 LRYLNILKTSISELPGSLCTLYHLQFLRVHRDVNNLPAKICNLS 658


>05_03_0376 -
           13252220-13252354,13252433-13252541,13253279-13253337,
           13253608-13253700,13254078-13254153,13254405-13254467,
           13254535-13254629,13254743-13254845,13254930-13255024,
           13255098-13255156,13255445-13255656,13256090-13256222,
           13256691-13257081
          Length = 540

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 168 ETYIGHNCTVSCC 130
           ET++GHN ++SCC
Sbjct: 266 ETFLGHNSSISCC 278


>01_03_0156 +
           13279354-13279479,13279722-13279790,13280102-13280272,
           13280358-13280464,13281332-13281437,13281540-13281586,
           13283429-13283747,13283917-13284006,13284095-13284157,
           13284303-13284377,13285379-13285441,13286677-13286700,
           13286926-13286978,13287687-13287861
          Length = 495

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 397 ELTANHSEIAKNGLRRLWGVPDTLAYVGHLFRMEIPKEAFSGKVVAYKVRSDHGRRTPNW 576
           E  A HS +  NGL   W  P T   V +   ++I K   S   +   V +  G+  P+ 
Sbjct: 168 ETLARHSILGPNGLHGQWTGPVTAIKVQYPSNLDIIKSDVSS--LFPSVLNQDGQNGPST 225

Query: 577 LAVDS 591
           ++ DS
Sbjct: 226 ISTDS 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,308,223
Number of Sequences: 37544
Number of extensions: 390753
Number of successful extensions: 977
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)