Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_M14
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7) 30 2.2
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_54440| Best HMM Match : P53_tetramer (HMM E-Value=8.4) 29 2.9
SB_23365| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 2.9
SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_1700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_6696| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_10454| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 454 VPDTLAYVGHLFRMEIPKEAFSGKVVAYKVRSDHGRRTPNWLAVDSRHGLIXGIPQYQDI 633
+P+ + YVG F +IP + F+ K+ ++ R PNWLA D + G+P +D+
Sbjct: 519 LPNAITYVGMAFIYKIPSKIFNCKLDYIEISEGSSRTLPNWLAYDEHKQELYGVPSMEDL 578
>SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7)
Length = 288
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 468 GLCRTSVPH---GNPQGSVLRKSRCL*SSQRPREAYTELAGGGFEARSYXRYPT 620
G R SVP G+ QG + K + EA+T A GG E Y YP+
Sbjct: 144 GRRRISVPRRRAGSAQGCITNKKKTPPRRVNLLEAFTAAAVGGNEVEGYNHYPS 197
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 535 YKVRSDHGRRTPNWLAVDSRHGLIXGIPQYQD 630
+K+ + + P+WLA+D + G+P ++D
Sbjct: 53 FKITEEGKKTLPHWLALDESTNTLEGVPSWRD 84
>SB_54440| Best HMM Match : P53_tetramer (HMM E-Value=8.4)
Length = 146
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 547 SDHGRRT-PNWLAVDSRHGLIXGIPQYQD 630
++ G++T P+WLA+D + G+P ++D
Sbjct: 2 TEEGKKTLPHWLALDESTNTLEGVPSWRD 30
>SB_23365| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 259
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 639 SSNVLVLWDTXNKTVPRIHRQPVRCTPPVVA 547
+ +V++ ++ K +PR H PVRC P VA
Sbjct: 219 TGDVMLAYEMNGKELPRDHGYPVRCLVPGVA 249
>SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 639 SSNVLVLWDTXNKTVPRIHRQPVRCTPPVVA 547
+ +V++ ++ K +PR H PVRC P VA
Sbjct: 248 TGDVMLAYEMNGKELPRDHGYPVRCLVPGVA 278
>SB_1700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 612 YPTVPGHWNSHIHRHRSRNYQRTHCN 689
Y P +WN H R R Y+ TH N
Sbjct: 20 YERSPLNWNPFDHTRRRRRYRNTHAN 45
>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 612 YPTVPGHWNSHIHRHRSRNYQRTHCN 689
Y P WN H R R YQR H N
Sbjct: 274 YERSPLDWNPFDHIRRRRRYQRVHNN 299
>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3307
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -2
Query: 332 HSKSSAHAMYLAHPIFNTHAQCSQQLS*THLDDLFILKPKRTAFQELFNLRIRYWKHTSD 153
+S +A LA I T+ CS+QLS H D + ++ ++ NL+++Y D
Sbjct: 553 YSYGFVNARSLAVKIVTTYTLCSEQLSSQHHYD-YGMRAVKSVLTAAGNLKLKYPDENED 611
Query: 152 TIV 144
++
Sbjct: 612 ILM 614
>SB_6696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 525 FSGERFLGDFHAEQMSYIGQRVGYTP*SP 439
F G RFLGD H + +S G + Y P +P
Sbjct: 126 FRGNRFLGDHH-DALSVFGCKYKYKPDNP 153
>SB_10454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 612 YPTVPGHWNSHIHRHRSRNYQRTHCN 689
Y P WN H R R YQR H N
Sbjct: 175 YERSPLDWNPFDHIRRRRRYQRVHNN 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,781,999
Number of Sequences: 59808
Number of extensions: 463068
Number of successful extensions: 3579
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3572
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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