Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M14
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    32   0.36 
Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical pr...    31   1.1  

>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 335 GHSKSSAHAMYLAHPIFNTHAQCSQQL 255
           G+S  S  +++L HP+FNTH Q  QQL
Sbjct: 486 GNSPHSRSSLFLQHPVFNTH-QSEQQL 511


>Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical
           protein F28B1.5 protein.
          Length = 685

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 654 DGECVSSNVLVLWDTXNKTV--PRIHRQPVRCTPPVVAANFISNDFSGERF 508
           D  C+ S+ LV++   N  +  P  H   ++C  P V+ N     F+ ER+
Sbjct: 11  DNRCLDSDELVVFSAENDPIVFPSGHAPSMKCVNPPVSQNGTLKSFTTERY 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,417,585
Number of Sequences: 27780
Number of extensions: 335831
Number of successful extensions: 866
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)