Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M13
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    45   8e-06
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   2.3  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    26   3.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   3.9  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   5.2  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.2  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    25   9.1  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 23/84 (27%), Positives = 42/84 (50%)
 Frame = +3

Query: 381 RELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPXKLVLIEKDPRF 560
           ++  Q+ L  P +   IV  +   Q+ TV EVGPG G +T  ++ +A  K++ +E DPR 
Sbjct: 26  KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKA-RKVIAVEMDPRM 84

Query: 561 LPSLELLXDACRDKVDVDIITGDI 632
              +         +  + ++ GD+
Sbjct: 85  AAEITKRVQGTPKEKKLQVVLGDV 108


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 425 QNSACLR*YSESYRL*SWTRPGWNN 499
           +NSAC R Y E+ R  SW+R   NN
Sbjct: 100 RNSACDRYYQEALRKKSWSRSLSNN 124


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +3

Query: 177 GLHDRSRSVGCLLVFYLRHQTGDVP*RFRRAPENTAVIMAVAKTALQIRLPPLPSIKDVI 356
           G H  S++V   LV  L H +G V    +  P N        K  L + + P+ + K + 
Sbjct: 305 GSHFPSKTVPLALVIRLTHVSGKVRLLIKPPPSNRVWYAFYEKPRLHLIVEPMVARKQLT 364

Query: 357 KLYKL----RALRELSQNFLMEPRLID 425
             Y +    + L EL    ++ P + D
Sbjct: 365 NNYLINFITQKLVELVHETIVMPNMND 391


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +1

Query: 136 VQKLQVISKRNRLTGFTIGAGVLGV----YLYSIFAIKQETFLDDFDEPPKI 279
           +  L++    ++ T   IGAG+ G+     L ++FA  ++ FL   ++PP+I
Sbjct: 246 ISSLKLDESLSQKTVAIIGAGMAGISCARQLTNLFAQYEQDFLSRGEKPPRI 297


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 378 LRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSI-IRQAPXK 530
           L EL+ N     R +D I R    +++  VC VG GP G++ +I I+Q   K
Sbjct: 71  LNELTDNL----RKLDTIER---EVEDVDVCIVGAGPAGLSAAIRIKQQAAK 115


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 239 RRRSLTISTSPRKYSSNHGRR*NCITDKAASTT 337
           +  S + + SPR+  S HG R  C++  A+S++
Sbjct: 498 KNHSKSNTLSPRRKGSRHGPREPCLSPDASSSS 530


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 231 GEDRIQVNTQHSGSYREARQSIAFRNHL*FLNAFAISXFD*FHISYFGLLEHW 73
           G +R +     S  ++   QS+   N +  L   +IS      +S++G LEHW
Sbjct: 165 GPERSKQAIDKSFLFQRLVQSVWNDNPISALAELSISFLSYSILSHYGALEHW 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,835
Number of Sequences: 5004
Number of extensions: 48108
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)