Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_M13
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0111 + 5381779-5382117,5382775-5382798 49 3e-06
07_03_0548 + 19349943-19350290,19350372-19351100 47 1e-05
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 37 0.015
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319... 30 1.3
10_08_0357 - 17158414-17160150,17160534-17160710 29 2.3
07_01_1103 + 10141766-10143583 29 3.1
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 29 3.1
10_08_0359 - 17167829-17169595,17169976-17169996 28 7.1
06_03_0102 - 16662937-16663245 28 7.1
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 28 7.1
10_08_0354 - 17104223-17106061,17106770-17106794,17107317-171075... 27 9.4
>10_02_0111 + 5381779-5382117,5382775-5382798
Length = 120
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 393 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPXKLVLIEKDPRFLPSL 572
Q+ L P L+D IV +G TV E+GPG G +T+ +++ +V +E DPR + L
Sbjct: 40 QHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPRMVLEL 99
>07_03_0548 + 19349943-19350290,19350372-19351100
Length = 358
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +3
Query: 366 KLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPXKLVLIE 545
+ R + Q+ L PR++D IVR + V EVGPG G +T ++ ++ +E
Sbjct: 34 RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 93
Query: 546 KDPRFLPSLELLXDA 590
DPR + ++ DA
Sbjct: 94 IDPRMVDAVTARVDA 108
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +3
Query: 393 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPXKLVLIEKD 551
+N+++ ++ +++V A+G + V E+GPG G +T +++ A + +EKD
Sbjct: 25 ENYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALL-DAGATVFAVEKD 76
>06_03_1032 +
27029698-27029785,27030640-27031275,27031739-27031993,
27032451-27032605,27032704-27032783,27032891-27033026,
27033228-27033377,27033474-27033641
Length = 555
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 270 PENTAVIMAVAKTALQIRLPPLPSIKDVIKLYKLRALRE-LSQNFLMEPRLIDKIVRASG 446
PE A I+AVA + PS+K V++ L+ RE L + P+L+ ++ SG
Sbjct: 474 PEEMAHILAVASMCIHHSSSSRPSMKSVVRF--LKGDRESLEMMQMQRPKLMKPLMFDSG 531
Query: 447 NIQNHT 464
+ +++T
Sbjct: 532 DSEDYT 537
>10_08_0357 - 17158414-17160150,17160534-17160710
Length = 637
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Frame = +3
Query: 294 AVAKTALQIRLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTV-C 470
A A A++ R P PS + + + R + N L+ + + +G +HTV C
Sbjct: 78 AAAAAAVEQRRPASPSRRPLED--GVVETRRMDDNALLRSLVEKGLAVKTGTAAHHTVQC 135
Query: 471 E---VGPG-PGGITRSIIRQAPXKLVLIEKDPRF 560
+ VG G GG+ +++ K+V++EK F
Sbjct: 136 DAVVVGSGCGGGVAAAVLASKGYKVVVVEKGDYF 169
>07_01_1103 + 10141766-10143583
Length = 605
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 595 RQASXKSSNDGKNRGSFSIKTSXLGACLIIDRVIPPGPGPTS 470
R+ +S DG R + +++ L+ +RV+PP P P S
Sbjct: 169 RKREPQSGEDGVGRARAAPQSAGTETALLEERVMPPQPAPQS 210
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -3
Query: 580 KSSNDGKNRGSFSIKTSXLGACLIIDRVIPPGPGPTSQT 464
KSS G GSF K+ G+ ID IP PGP S T
Sbjct: 377 KSSGQGGFFGSFFRKSLKKGSFHDIDPGIPTTPGPQSAT 415
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 432 VRASGNIQNHTV-CE---VGPG-PGGITRSIIRQAPXKLVLIEKDPRF 560
VR + ++HTV C+ VG G GG+ +++ A K+V++EK F
Sbjct: 74 VRPGASDEHHTVRCDAVIVGSGCGGGVAAAVLASAGYKVVVVEKGDYF 121
>06_03_0102 - 16662937-16663245
Length = 102
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 393 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPG 491
Q+ L P L+D IV +G TV E+G G
Sbjct: 39 QHILRNPALVDSIVEKAGLKPTDTVLEIGSARG 71
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 214 LYSIFAIKQETF-LDDFDEPPKIQQ*SWPSL 303
L +IF +K+ET LD+ DE ++ + +WP+L
Sbjct: 320 LQAIFDLKEETVVLDEVDELLELMRRTWPTL 350
>10_08_0354 -
17104223-17106061,17106770-17106794,17107317-17107561,
17108432-17108677
Length = 784
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 402 LMEPRLIDKIVRASGNIQNHTV-CE---VGPG-PGGITRSIIRQAPXKLVLIEKDPRF 560
L E L K +S + +HTV C+ VG G GG+ +++ A K+V++EK F
Sbjct: 238 LAEKGLALKTGASSPSAHHHTVLCDAVVVGSGCGGGVAAAVLASAGYKVVVVEKGDYF 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,349
Number of Sequences: 37544
Number of extensions: 308795
Number of successful extensions: 652
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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