Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M13
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...    92   3e-19
U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical pr...    47   1e-05
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    38   0.008
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    28   4.8  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    28   4.8  
U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 42/95 (44%), Positives = 65/95 (68%)
 Frame = +3

Query: 321 RLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGIT 500
           RLPPLP+++D I +Y+LRA + LSQN+LM+  +  KI + +  I+   V E+GPGPGGIT
Sbjct: 6   RLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGIT 65

Query: 501 RSIIRQAPXKLVLIEKDPRFLPSLELLXDACRDKV 605
           R+I+     +L ++E D RF+P L+ L +A   ++
Sbjct: 66  RAILEAGASRLDVVEIDNRFIPPLQHLAEAADSRM 100


>U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical
           protein F35D11.5 protein.
          Length = 133

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 41/63 (65%)
 Frame = +1

Query: 79  LKQAEIAYMKLIEXRNRERVQKLQVISKRNRLTGFTIGAGVLGVYLYSIFAIKQETFLDD 258
           L + +  + K  E  N+ERV+++   + +N ++   +   V+G+Y Y+++++KQETFL++
Sbjct: 55  LPRPQKRFAKQFEKVNQERVKEIFAKNYKNHISFAVLLGVVIGIYWYTMYSVKQETFLEE 114

Query: 259 FDE 267
            DE
Sbjct: 115 IDE 117


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 393 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPXKLVLIEKDPRFLPSL 572
           Q+ L  P +++ IV  S      TV EVGPG G +T  ++  A   ++  E DPR +  +
Sbjct: 30  QHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVA-KTVIACEIDPRMIAEV 88

Query: 573 E 575
           +
Sbjct: 89  K 89


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +3

Query: 84  AGRNSLYEINRXEKSRTRSKITSDFETQSTDGLHDRSRSVGCLLVFYLRHQTGDVP*RFR 263
           AGRN  Y+I    K R  S+IT++  T S            C L+F L H+  +     R
Sbjct: 365 AGRNITYQIKYTLKDRNSSQITNEL-TDSNLKCPKFECQWKCALIFNLPHRPREYKFEIR 423

Query: 264 RAPEN 278
              +N
Sbjct: 424 AKVDN 428


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 273 ENTAVIMAVAKTALQIRLPPL-PSIKDVIK 359
           EN AVI +  K   +I +PPL PS  DV+K
Sbjct: 360 ENKAVISSPKKEPEEIEVPPLPPSAPDVVK 389


>U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical
           protein T25F10.3 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 294 AVAKTALQIRLPPLPSIKDVIK 359
           AV++TA +  LPPLPS +D  K
Sbjct: 342 AVSRTARREALPPLPSYEDATK 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,548,794
Number of Sequences: 27780
Number of extensions: 267753
Number of successful extensions: 543
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)