Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_M11
(831 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 4e-25
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 3e-18
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 71 9e-13
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 60 2e-09
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 56 5e-08
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 54 1e-07
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 48 7e-06
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 48 7e-06
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 48 1e-05
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 46 5e-05
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 44 2e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 41 0.001
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 41 0.001
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 40 0.002
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 40 0.002
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 40 0.002
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 40 0.003
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 38 0.010
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 37 0.017
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.023
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 36 0.030
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.040
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.040
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 36 0.053
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 36 0.053
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 35 0.070
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.070
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.093
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 34 0.16
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 33 0.28
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 33 0.28
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 33 0.38
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 33 0.38
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 32 0.50
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 32 0.66
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 31 1.5
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 30 2.6
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 29 3.5
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 29 3.5
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 4.6
SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_44333| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11) 28 8.1
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 112 bits (269), Expect = 4e-25
Identities = 70/175 (40%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Frame = +1
Query: 214 MENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR------GYGF 375
MENG D TN L++NY+P M+++ + +F +G + SCKLI +R GY F
Sbjct: 18 MENGTSDERTN-----LIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAF 72
Query: 376 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 555
V Y+ +DA KA NG +Q KTLKVSFA + S +NLYIS LP DM
Sbjct: 73 VNYDNPDDANKAVREMNGARLQNKTLKVSFA------RPSSTEIKNANLYISGLPKDMKE 126
Query: 556 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQCPIPG 699
E + LF PFG I S+V +G GFV ++ R +A+ AI +N + +PG
Sbjct: 127 EEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNK-TLPG 180
Score = 45.2 bits (102), Expect = 7e-05
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +1
Query: 235 ANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN-----RGYGFVEYEKHED 399
++T + L ++ +P+ M + + ALF GKI + K++ + RG GFV ++K +
Sbjct: 106 SSTEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCE 165
Query: 400 AEKARAAFNGLLMQGKTLKVSFALLNPEN 486
A+ A N + G +K++ NP N
Sbjct: 166 AQTAIDDLNNKTLPGTNVKLTVKFANPPN 194
Score = 42.7 bits (96), Expect = 4e-04
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +1
Query: 475 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFV 630
N E + D +NL I+ +PP M+ E + +F GN+T+ ++ S G FV
Sbjct: 14 NHEPMENGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFV 73
Query: 631 CYETRQQAEDAIKHMNG 681
Y+ A A++ MNG
Sbjct: 74 NYDNPDDANKAVREMNG 90
Score = 42.3 bits (95), Expect = 5e-04
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +1
Query: 262 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQ 441
+ V +P+ T +Y LFS G I + +L ++GYGFV +E+A A NG
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSNYEEACHAICCLNGTPQH 333
Query: 442 GK 447
GK
Sbjct: 334 GK 335
Score = 36.3 bits (80), Expect = 0.030
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 520 LYISNLPPDMTLERLNTLFSPFGNITN--SRVSQGIGFVCYETRQQAEDAIKHMNG 681
+++ LP + T L LFSP+G ITN ++ +G GFV ++A AI +NG
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSNYEEACHAICCLNG 329
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 89.4 bits (212), Expect = 3e-18
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 14/158 (8%)
Frame = +1
Query: 250 SPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDAEKA 411
S T L+VNYIP+ MT +F A+ + +CK++ ++ G+GFV+Y EDA+KA
Sbjct: 45 SKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKA 104
Query: 412 RAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN 591
NG + K LKV+F+ +N +NLY+ N+P + F +GN
Sbjct: 105 IDKLNGFTIGNKVLKVAFSRPGGDNTKG------ANLYVCNIPKQLPEAEFRKAFEAYGN 158
Query: 592 ITNSR--------VSQGIGFVCYETRQQAEDAIKHMNG 681
I N R + +G GFV Y+ + +A+ AI ++G
Sbjct: 159 IVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSG 196
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Frame = +1
Query: 226 GGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR------GYGFVEYE 387
GGD N L V IP+ + F A G I +C+L+ ++ G GFV Y+
Sbjct: 126 GGD---NTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYD 182
Query: 388 KHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESN 519
K +A+ A ++ +G G T+ + + + P+ N
Sbjct: 183 KKAEAQAAISSLSGTFFPGSTMGLQIRYADDNSAKVRPPNNVPN 226
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 71.3 bits (167), Expect = 9e-13
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Frame = +1
Query: 256 TKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN-----RGYGFVEYEKHEDAEKARAA 420
T + V + M + M + + GKI S K++ + +G+GFV +E E+AE+A
Sbjct: 109 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNV 168
Query: 421 FNGLLMQGKTLKVSFALLNPENKVSHKPDTES------------NLYISNLPPDMTLERL 564
NG + G+ L A E K + E NLYI NL + ERL
Sbjct: 169 LNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERL 228
Query: 565 NTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 684
FSP+G I++++V S+G GFVC+ + ++A A+ MNG+
Sbjct: 229 REEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGR 275
Score = 35.9 bits (79), Expect = 0.040
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +1
Query: 316 FSAMGKIESCKLIAN-----RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNP 480
FS G I S K++ + +G+GFV + E+A KA NG ++ K L V+ A
Sbjct: 232 FSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRRE 291
Query: 481 ENK 489
E K
Sbjct: 292 ERK 294
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 472 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGI 621
+NP ++ P ++LY+ +L PD+T L FS G++ + RV + +
Sbjct: 1 MNPSTGAANYPI--ASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDL 48
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 60.5 bits (140), Expect = 2e-09
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Frame = +1
Query: 358 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPE-----NKVSHKPDTESNL 522
++G+ FVEY+ E A+ A NG+L+ G+ +KV P+ + + + +
Sbjct: 142 HKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKVGRPSNVPQAAPLIEQFEQEAKKYARI 201
Query: 523 YISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAIKHMN 678
YI+++ PD+ + + ++F FG + + +S +G GF+ YE +Q A DAI MN
Sbjct: 202 YIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Frame = +1
Query: 280 PELMTRDMMYALFSAMGKIESCKLIA------NRGYGFVEYEKHEDAEKARAAFNGLLMQ 441
P+L+ D+ ++F A GK+ C L ++GYGF+EYE + A A A+ N +
Sbjct: 208 PDLLEDDIK-SVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLG 266
Query: 442 GKTLKVSFALLNP 480
G+ L+V A+ P
Sbjct: 267 GQFLRVGRAITPP 279
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 56.0 bits (129), Expect = 4e-08
Identities = 53/173 (30%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Frame = +1
Query: 232 DANTNVSPTK----LMVNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVE 381
D NVSP L V +P T L S G IE L+ + +GYGFVE
Sbjct: 101 DKTLNVSPAPPESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVE 160
Query: 382 YEKHEDAEKARAAFNGLLMQ---GKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 552
Y E+A +A+ + G+ L+V+FA N +++ L++ LP D
Sbjct: 161 YATRENAMQAKQQLLNTASKYIGGRILRVAFA---ESNLLTYADVHSRTLFVDRLPRDFK 217
Query: 553 LERL-NTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 684
L LFS GN+T ++V S+G FV Y T ++AE + NG+
Sbjct: 218 NGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGR 270
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = +1
Query: 244 NVSPTKLMVNYIP-ELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDA 402
+V L V+ +P + ++ LFS G + ++ N RG+ FV+Y E+A
Sbjct: 201 DVHSRTLFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEA 260
Query: 403 EKARAAFNGLLMQGKTLKVSF 465
EK + A NG ++G ++V++
Sbjct: 261 EKGQRAHNGRQVEGSNIRVAY 281
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 55.6 bits (128), Expect = 5e-08
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Frame = +1
Query: 196 RTMQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR---- 363
R+ + M++ +S T L + + T D + L G I S K I ++
Sbjct: 80 RSSSDRMDSLPDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNL 139
Query: 364 --GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNL 537
GYGFV++E A+KA AA +Q + K + +NLYI NL
Sbjct: 140 CKGYGFVDFESPISAQKAVAALVNKGIQAQMAK-------------QQEQDPTNLYIQNL 186
Query: 538 PPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQCPIP 696
P + L +FS +G + ++R+ S+G+GF E+ ++ E IK N + +P
Sbjct: 187 PQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDFNKKM-LP 245
Query: 697 G 699
G
Sbjct: 246 G 246
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 54.4 bits (125), Expect = 1e-07
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Frame = +1
Query: 262 LMVNYIPELMTRDMMYALFSAMGKIESCKLI---ANRG-YGFVEYEKHEDAEKARAAFNG 429
L V + T++++ ++F+ + K+ CK+I ++G Y FVE+E H DA++A+ +
Sbjct: 371 LYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQEAKFRMDQ 430
Query: 430 LLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNIT 597
+ K LKV++A +P K + DT + ++++ +L ++ L F PFG I+
Sbjct: 431 RTVMDKKLKVNWATNHPGMK---RGDTNNHFHIFVGDLAENVDNALLRKTFEPFGEIS 485
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Frame = +1
Query: 358 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALL--NPE-------NKVSHK-PD 507
++G+GFV + + EDA KA A + + + GK +K ++A NP + V H+
Sbjct: 553 SKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKPLVWDDVFHQSSQ 612
Query: 508 TESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETR 645
+ +Y+ NLPPD+ L +FS +G+I ++V G+ R
Sbjct: 613 LNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFINAR 658
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 54.0 bits (124), Expect = 1e-07
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 15/168 (8%)
Frame = +1
Query: 226 GGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR------GYGFVEYE 387
G A N T + V + E ++ +++ LF G + + + +R GYGFVE+
Sbjct: 4 GPIAERNQDAT-IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFL 62
Query: 388 KHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLN 567
EDA+ A N + + GK ++V+ A + +N D +NL+I NL ++ + L
Sbjct: 63 GEEDADYAIKVMNMIKVYGKPIRVNKASAHNKNL-----DVGANLFIGNLDTEVDEKLLY 117
Query: 568 TLFSPFGNI---------TNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 684
FS FG I +++ S+G F+ + + ++ AI+ MNGQ
Sbjct: 118 DTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQ 165
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = +1
Query: 358 NRGYGFVEYEKHEDAEKARAAF-NGLLMQGKTLKVSFALLNPENKVSHKPDTESN-LYIS 531
NRG+ F+EYE H+ A AR +G + + V+ +P+ + + +Y+
Sbjct: 275 NRGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWADPQEEPDDDAMKKVKVVYLR 334
Query: 532 NLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 684
NL P +T E+L +S +G + + + FV + R A AI+ +G+
Sbjct: 335 NLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVHFTERDHALKAIEETDGK 385
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 48.4 bits (110), Expect = 7e-06
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Frame = +1
Query: 466 ALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGI 621
A+L E+ + PD SNL+I +LP + T L F PFG + +++V S+
Sbjct: 262 AVLLKESHYTPGPDG-SNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCF 320
Query: 622 GFVCYETRQQAEDAIKHMNG 681
GFV Y+ A++AI+HMNG
Sbjct: 321 GFVSYDNVMSAQNAIQHMNG 340
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +1
Query: 256 TKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRG------YGFVEYEKHEDAEKARA 417
+ L + ++P+ T + F G + S K+ ++ +GFV Y+ A+ A
Sbjct: 277 SNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQ 336
Query: 418 AFNGLLMQGKTLKV 459
NG + K LKV
Sbjct: 337 HMNGFQIGAKRLKV 350
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 48.4 bits (110), Expect = 7e-06
Identities = 24/101 (23%), Positives = 52/101 (51%)
Frame = +1
Query: 244 NVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAF 423
+V + + V ++ +++T+D + +F G I S LI RG +++ EK EDA +A
Sbjct: 537 SVCSSTIWVGHLAKIVTQDTLQGIFEEHGTITSIDLIPPRGCAYIQMEKREDAYRALDKL 596
Query: 424 NGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPD 546
+ + G ++K+++A +K ++ ++ +P D
Sbjct: 597 RNIKLYGNSVKLAWAPAKGVKDREYKEFFNVSIGVTYIPHD 637
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Frame = +1
Query: 247 VSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLI------ANRGYGFVEYEKHEDAEK 408
+ PT+L V + +T M+ A+F G ++S +LI ++GYGFV++ + E A++
Sbjct: 239 LGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKR 298
Query: 409 ARAAFNGLLMQGKTLKV 459
A NG + G+ LK+
Sbjct: 299 AMEQMNGFELAGRPLKI 315
Score = 36.3 bits (80), Expect = 0.030
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Frame = +1
Query: 316 FSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFAL-- 471
FS +G++ ++I++R G ++E+ + A +G + G + V
Sbjct: 166 FSKVGQVSDVRIISDRNSRRSKGIAYIEFTD-KSAVPLAIGLSGQKLLGAPIMVMLTQAE 224
Query: 472 ---LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQG 618
L E + +P + LY+ +L ++T + +F PFG + + ++ S+G
Sbjct: 225 KNRLAAEAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKG 284
Query: 619 IGFVCYETRQQAEDAIKHMNG 681
GFV + + A+ A++ MNG
Sbjct: 285 YGFVQFREAEAAKRAMEQMNG 305
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 45.6 bits (103), Expect = 5e-05
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Frame = +1
Query: 370 GFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 549
G+V Y+ E+A +A A+ NG + G ++V A N +H D + +++I NLP D+
Sbjct: 15 GYVVYKAAENANQAIAS-NGEEIDGFHIRVDLA----SNDKAH--DHQRSVFIGNLPFDI 67
Query: 550 TLERLNTLFSPFGNITNSR--------VSQGIGFVCYETRQQAEDAIKHMNGQ 684
E L LF+ GN+ + R + +G G+V +E++ A+K N +
Sbjct: 68 EEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAE 120
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 45.6 bits (103), Expect = 5e-05
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Frame = +1
Query: 262 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAF 423
L V I E D ++ LFS G+I++ + +R GY VEYE ++A+ A A
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 424 NGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYIS 531
NG M G+ + V +A + +K S ++L +S
Sbjct: 355 NGAEMLGQNISVDWAFIRGPSKKSRSLQAVTSLPLS 390
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Frame = +1
Query: 520 LYISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAIKHM 675
L+++N+ + + ++ LFS +G I N V+ +G V YET ++A+ A++ +
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 676 NG 681
NG
Sbjct: 355 NG 356
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 45.2 bits (102), Expect = 7e-05
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Frame = +1
Query: 262 LMVNYIPELMTRDMMYALFSAMGKIESC--KLIAN----RGYGFVEYEKHEDAEKARAAF 423
L+V +P T M F+ G+I+ C KL N RG+GFV ++K EDA+ +
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTS 176
Query: 424 NGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN 600
+ + QG+ +V L P+ ++ + L++ LP T + L F+ FG +T+
Sbjct: 177 HRI--QGRLCEV--RLPRPKEEL----NVPKKLFVGRLPESTTEKTLMEYFAQFGEVTD 227
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 44.0 bits (99), Expect = 2e-04
Identities = 25/70 (35%), Positives = 38/70 (54%)
Frame = +1
Query: 262 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQ 441
+ V +P M+ + A+F+ G+IE + I R YGFV + K E A +A NG +
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKI--RDYGFVYFAKRESAVQAIDGINGAYID 61
Query: 442 GKTLKVSFAL 471
G L+VS A+
Sbjct: 62 GCKLEVSLAI 71
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 517 NLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNG 681
++Y+ N+P M+ +L +F+ +G I R + GFV + R+ A AI +NG
Sbjct: 3 SIYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRESAVQAIDGING 57
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 42.3 bits (95), Expect = 5e-04
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +1
Query: 241 TNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR-----GYGFVEYEKHEDAE 405
T++ L V+ +P + LFS G ++ +L+ NR GYG+VEYE+ A
Sbjct: 166 TSLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSAS 225
Query: 406 KARAAFNGLLMQGKTLKVSFALLNPENK 489
A + ++G+T +S AL NP +
Sbjct: 226 TAVLTLDKTEVKGRT--ISVALSNPPTR 251
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Frame = +1
Query: 520 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAI 666
L++SNLP D + LFS G + R+ +G G+V YE A A+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAV 228
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 289 MTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 468
+T +++ F+ +G +E NR GFV ++ E A+KA NGL +Q ++VS A
Sbjct: 119 LTEEILKEEFNHLGHVERVNFEKNRSQGFVTFDTWEAADKAIDEMNGLKVQHVHIRVSMA 178
Query: 469 LLNPENKVSH 498
P H
Sbjct: 179 RRQPNMDEMH 188
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 547 MTLERLNTLFSPFGNI--TNSRVSQGIGFVCYETRQQAEDAIKHMNG 681
+T E L F+ G++ N ++ GFV ++T + A+ AI MNG
Sbjct: 119 LTEEILKEEFNHLGHVERVNFEKNRSQGFVTFDTWEAADKAIDEMNG 165
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 41.5 bits (93), Expect = 8e-04
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Frame = +1
Query: 304 MYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPE 483
M +F G++ + +G+GF+ + AE A+A + +G+TL+V FA
Sbjct: 68 MKEMFKKYGEVAEVFINKEKGFGFIRLDTRLHAEAAKAGLDMATRKGRTLRVRFA----- 122
Query: 484 NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYET 642
+H + L + NL +T E L FS FG++ + V S+G G V +
Sbjct: 123 ---TH----AAALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRSKGHGIVEFSR 175
Query: 643 RQQAEDAIKHMN 678
+ A +A++ ++
Sbjct: 176 KNNAHNAMQKIS 187
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +1
Query: 262 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAF 423
+ V IP + + + +FS +G + S +L+ +R GYGF EY+ E A A
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 424 NGLLMQGKTLKVSFA 468
NG + G+ L+V A
Sbjct: 87 NGYELNGRALRVDSA 101
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Frame = +1
Query: 517 NLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKH 672
++++ N+P + + E+L +FS G + + R+ +G GF Y+ ++ A A+++
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 673 MNG 681
+NG
Sbjct: 86 LNG 88
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/90 (27%), Positives = 47/90 (52%)
Frame = +1
Query: 190 NKRTMQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGY 369
N+ +++ E D ++ V + N + + R + +FS GK+ C L AN +
Sbjct: 26 NRAKLESRYETNKNDPHS-VRCRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN--F 82
Query: 370 GFVEYEKHEDAEKARAAFNGLLMQGKTLKV 459
GFV++E + A++A A +G ++ GK + V
Sbjct: 83 GFVQFETEKGADEAVAKEHGRIINGKKIDV 112
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 520 LYISNLPPD-MTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 684
++I NL D + + L +FS G + + GFV +ET + A++A+ +G+
Sbjct: 48 IFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGADEAVAKEHGR 103
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +1
Query: 232 DANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRG------YGFVEYEKH 393
DA+ L V + + T + + +FS G I SC++I ++ Y F+E+EK
Sbjct: 112 DADIKPPDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKD 171
Query: 394 EDAEKARAAFNGLLMQGKTLKVSFA 468
ED E+A + +L+ + + V F+
Sbjct: 172 EDCERAYFKMDNVLIDDRRIHVDFS 196
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +1
Query: 253 PTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDAEKAR 414
PTKL V ++ + +D + +FS G++++ L +R G+ +VEY E+ EKA
Sbjct: 1156 PTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKAL 1215
Query: 415 AAFNGLLMQGKTLKVSFAL 471
+G + G+ + V L
Sbjct: 1216 KHMDGGQIDGQEIAVQSVL 1234
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +1
Query: 475 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFV 630
+P + + LY+++L ++ + + +FS +G + + +S+G +V
Sbjct: 1144 SPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYV 1203
Query: 631 CYETRQQAEDAIKHMNG 681
Y ++ E A+KHM+G
Sbjct: 1204 EYVDPEECEKALKHMDG 1220
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Frame = +1
Query: 346 KLIANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESN-L 522
+ ++ + +G V +EK A G+ GK ++ ++ + +SHK + + +
Sbjct: 14 RTVSEQKFGCVFFEK-----PAWPPTRGMCAIGKLAEIQHSI---QELLSHKEEHDQRTI 65
Query: 523 YISNLPPDMTLERLNTLFSPFGNI-------TNSRVSQGIGFVCYETRQQAEDAI 666
YI + PD+ L ++F P+G I T + S+G G+V YE + A+ A+
Sbjct: 66 YIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRAL 120
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +1
Query: 328 GKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 468
GKI L RGYGFVE++ H DAE A NG + G+ + V F+
Sbjct: 713 GKIRDISL--KRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFS 757
Score = 36.3 bits (80), Expect = 0.030
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 469 LLNPENKVSHKPDTESNLYIS--NLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYET 642
++ +V P + YI LP D+ + +G I + + +G GFV ++
Sbjct: 672 IIQDGGRVMRTPCFRAGKYIKAYRLPRDVRESDVEKFLRGYGKIRDISLKRGYGFVEFDD 731
Query: 643 RQQAEDAIKHMNGQ 684
+ AEDA+ +NG+
Sbjct: 732 HRDAEDAVHDLNGR 745
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Frame = +1
Query: 253 PTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIA--------------NRGYGFVEYEK 390
P K+ +P +T+D + A+F A + LI +RG+GFV +
Sbjct: 49 PNKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFAN 108
Query: 391 HEDAEKARAAFNGLLMQGKTLKVS 462
EDA+ A + NG +QG+TLK++
Sbjct: 109 PEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 37.9 bits (84), Expect = 0.010
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Frame = +1
Query: 259 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLM 438
++ + +P T D + F + G++ L N YGFVE+E DA+ A NG M
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN--YGFVEFEDDRDADDAVYECNGKEM 61
Query: 439 QGKTLKVSFA---LLNPENKVSHKPD-------TESNLYISNLPPDMTLERLNTLFSPFG 588
G+ + V + + ++ S D T + I NL ++ + L G
Sbjct: 62 LGERILVEHSRGGARSSSSRPSRGRDKYGPPVRTPWRMTIENLSSRVSWQDLKDFCRQVG 121
Query: 589 NITNS---RVSQGIGFVCYETRQQAEDAIKHMNGQ 684
++T + QG G + + ++ + A+K ++G+
Sbjct: 122 DVTYGDAHKQRQGEGVIEFSCKRDLKRALKKLDGE 156
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 37.1 bits (82), Expect = 0.017
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 TKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR-GYGFVEYEKHEDAEKARAAFNGL 432
TKL V + + F G++ + N G+ FVEYE + DAE+A +G
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGA 63
Query: 433 LMQGKTLKVSFA 468
+ +T++V F+
Sbjct: 64 NVCDRTIRVEFS 75
Score = 35.1 bits (77), Expect = 0.070
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 514 SNLYISNLPPDMTLERLNTLFSPFGNITN---SRVSQGIGFVCYETRQQAEDAIKHMNG 681
+ LY+ NL + L F FG ++ +R G FV YE + AE+A++ ++G
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDG 62
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 36.7 bits (81), Expect = 0.023
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Frame = +1
Query: 256 TKLMVNYIPELMTRDMMYALFSAMGKIESC----KLIANR----GYGFVEYEKHEDAEKA 411
++L++ + T ++ FSA G++ K + R G+GFV++ DA KA
Sbjct: 247 SRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKA 306
Query: 412 RAAFNGLLMQGKTLKVSFAL---LNPENKVSHKPDTESN 519
N + G+ + V +A+ + EN+ HK D SN
Sbjct: 307 LEEMNAKKILGRPVAVDWAVPKSMYTENQEKHKKDYNSN 345
Score = 28.7 bits (61), Expect = 6.1
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +1
Query: 247 VSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN-------RGYGFVEYEKHEDAE 405
+S T + V +P +T + F +G ++ ++ + RG+G+V + EDA
Sbjct: 17 ISKTTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDAL 76
Query: 406 KARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE 513
KA+ + +G+ + + F+ E K KP E
Sbjct: 77 KAKDNIKSI--KGRPIHLDFS----EKKARTKPGRE 106
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 36.3 bits (80), Expect = 0.030
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 259 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLM 438
++ + +P D + F G+ + ++I GYGFVE++ +DAE A NG M
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFDYSDDAEDAVYECNGKKM 63
Query: 439 QGK 447
G+
Sbjct: 64 LGE 66
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 514 SNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 684
+ +Y+ LP + + F +G I + G GFV ++ AEDA+ NG+
Sbjct: 3 NRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFDYSDDAEDAVYECNGK 61
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 35.9 bits (79), Expect = 0.040
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Frame = +1
Query: 559 RLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 681
RL F PFG + +++V S+ GFV Y+ A++AI+HMNG
Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNG 325
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 466 ALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 609
A+L E+ + PD SNL+I +LP + T L F PFG + +++V
Sbjct: 214 AVLLKESHYTPGPDG-SNLFIYHLPQEFTDADLMQTFQPFGTVISAKV 260
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 35.9 bits (79), Expect = 0.040
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 514 SNLYISNLPPDMT---LERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 684
S +YI N+ + + +ER F P ++ +R G F +E R+ AEDA++ ++G+
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGR 61
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 35.5 bits (78), Expect = 0.053
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 295 RDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFAL 471
R+ + +FS G +E ++ R Y FV Y+ H +A A NG + L+ F L
Sbjct: 63 RESITRVFSLYGTLERVVMLPQRSYSFVSYKSHNNALNAMRNLNGKALDEFGLRSVFYL 121
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 35.5 bits (78), Expect = 0.053
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 358 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 468
+RG+GFV E ED E F+G +G+ LKV+ A
Sbjct: 82 SRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEA 118
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 35.1 bits (77), Expect = 0.070
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +1
Query: 484 NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS--QGIG----FVCYETR 645
+ ++ + +Y+ NLP D+ + L+ +F +G+I + + +G G FV +E
Sbjct: 251 SNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDP 310
Query: 646 QQAEDAIKHMNG 681
+ AEDA+K +G
Sbjct: 311 RDAEDAVKGRDG 322
Score = 31.9 bits (69), Expect = 0.66
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +1
Query: 241 TNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYG----FVEYEKHEDAEK 408
+N + ++ V +P+ + ++ +F G I L RG G FVE+E DAE
Sbjct: 256 SNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAED 315
Query: 409 ARAAFNGLLMQGKTLKVSF 465
A +G G ++V F
Sbjct: 316 AVKGRDGHEFDGYRIRVEF 334
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 35.1 bits (77), Expect = 0.070
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +1
Query: 250 SPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKA 411
SP K+ + +P + D + L S+ G++ + L+ + +GY F EY + A
Sbjct: 671 SPHKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVA 730
Query: 412 RAAFNGLLMQGKTLKVSFALLNPENKVSH 498
NG+ + K L V A + + +++
Sbjct: 731 IQGLNGMQLGDKKLIVQRASVGAKQNLNN 759
Score = 33.5 bits (73), Expect = 0.21
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Frame = +1
Query: 259 KLMVNYIPELMTRDMMYALFSAMGK-----------IESCKLIANRGYGFVEYEKHEDAE 405
+L V IP +T ++M F+A K + + ++ + + F+E E+
Sbjct: 564 RLYVGNIPFGVTENLMIEFFNAKMKEAKLNTAPGNPVIAAQINTEQNFAFIELRSVEETT 623
Query: 406 KARAAFNGLLMQGKTLKVSFAL-LNP-----ENKVSH--------KPDTESNLYISNLPP 543
+A A F+G+++QG+ LK+ P EN H PD+ ++I LP
Sbjct: 624 QAMA-FDGIILQGQALKIRRPKDYQPIPGMSENASVHVPGVVSTVVPDSPHKIFIGGLPN 682
Query: 544 DMTLERLNTLFSPFGNI--------TNSRVSQGIGFVCYETRQQAEDAIKHMNG 681
+ +++ L S FG + + + +S+G F Y + AI+ +NG
Sbjct: 683 YLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNG 736
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 34.7 bits (76), Expect = 0.093
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Frame = +1
Query: 247 VSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN---------RGYGFVEYEKHED 399
VS KL + + + ++ + + G+IE + + + RGY FVE++K ED
Sbjct: 384 VSERKLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKED 443
Query: 400 AEKARAAFNGLLMQGKTLKVSFA 468
A KA N ++ + L V +A
Sbjct: 444 ARKALRGLNKKIVLSRALVVDWA 466
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 34.3 bits (75), Expect = 0.12
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 TKLMVNYIP-ELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGL 432
T+L V + E RD+ +F GK+ C L YGF+EYE DAE+A N
Sbjct: 6 TQLFVGRLSKETKLRDLEN-VFYLYGKLLRCDL--KTAYGFIEYEDPRDAEEAMRRENNR 62
Query: 433 LMQGKTLKVSF 465
+ G + V +
Sbjct: 63 KLFGSRIVVEY 73
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 33.9 bits (74), Expect = 0.16
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 364 GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFAL 471
G+GFV + +A KAR NG ++ G+ ++VS +
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCM 160
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 33.5 bits (73), Expect = 0.21
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +1
Query: 220 NGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGK---IESCKLIANRGYGFVEYEK 390
+GG D N S L+V + T D + A F I + +RG+GFV+Y+
Sbjct: 279 SGGRDQNPPNS--SLIVRNLSYDTTTDSLGAAFEGCSNAKVIFDRESGESRGFGFVDYDD 336
Query: 391 HEDAEKARAAFNGLLMQGKTLKVSFA 468
E A+K + G + G+ +++ FA
Sbjct: 337 VETAKKVLSEMAGAEVDGRQVRLDFA 362
Score = 33.1 bits (72), Expect = 0.28
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 29/157 (18%)
Frame = +1
Query: 298 DMMYALFSAMGKIESCKLIA----NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSF 465
+ + A F G +C++I +RG+G+ ++ ED KA NG G+ ++++
Sbjct: 194 ETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTSKEDYNKA-LELNGEDCCGREIRINP 252
Query: 466 ALLNPENKVSHKP--------------------DTESNLYISNLPPDMTLERLNTLFSPF 585
A P + P S+L + NL D T + L F
Sbjct: 253 ANSKPSRGGGNTPRGGGRGRGGRGGFSGGRDQNPPNSSLIVRNLSYDTTTDSLGAAFEGC 312
Query: 586 GNI-----TNSRVSQGIGFVCYETRQQAEDAIKHMNG 681
N S S+G GFV Y+ + A+ + M G
Sbjct: 313 SNAKVIFDRESGESRGFGFVDYDDVETAKKVLSEMAG 349
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 478 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIG 624
P K KP+ ++I LP + +N +F G IT+ R+S+G G
Sbjct: 339 PMQKQKEKPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGKG 387
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +1
Query: 259 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIA-----NRGYGFVEYEKHEDAEKARAAF 423
++ V IP + D + +F G I +L+ NRGY FV Y +DA++
Sbjct: 75 EVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFNGQNRGYAFVVYTSKDDAKRCVKTL 134
Query: 424 NGL-LMQGKTLKV 459
N + +GK + V
Sbjct: 135 NNYEIRKGKCIGV 147
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 361 RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 468
RG+GFV + E+ EKA F+G + G+ +KV+ A
Sbjct: 137 RGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEA 172
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 33.1 bits (72), Expect = 0.28
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +1
Query: 250 SPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKA 411
S + + V +P +T ++ +F GK+ ++ + RG F+ + + A+ A
Sbjct: 8 SKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNA 67
Query: 412 RAAFNGLLMQGKTLKVSFA 468
AA N M G+T+K + A
Sbjct: 68 VAAVNKKQMFGRTIKCTIA 86
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = +1
Query: 475 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVC 633
NP K S+ P S ++++NL + ++L F G++ + + S+G+G V
Sbjct: 173 NPMMKKSNDP-AASTVFVTNLDYKVNWQKLKDTFKCAGHVIRAEIMEDDEKKSKGMGTVQ 231
Query: 634 YETRQQAEDAIKHMNGQ 684
+ET +A +A+ ++G+
Sbjct: 232 FETPMEAMNAVNLLHGK 248
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 32.7 bits (71), Expect = 0.38
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +1
Query: 184 SNNKRTMQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR 363
S + R + + +GG +N ++++ +P+L+T + L +G I+ K+ +
Sbjct: 621 SKSSRVVVSKSSSGGKPSN------RVVMGSLPDLITPSRLKELLVGIGPIQQLKMSTTK 674
Query: 364 GYGFVEYEKHEDAEKARAAFN 426
V +EK+E A R F+
Sbjct: 675 HKALVTFEKNEHALACRRKFH 695
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 32.3 bits (70), Expect = 0.50
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 361 RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 468
RG+GFV + E+ EKA F+G G+ +KV+ A
Sbjct: 45 RGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQA 80
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 32.3 bits (70), Expect = 0.50
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 514 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 684
+ +Y LP D L +G + + G GFV ++ + A+D + +NG+
Sbjct: 5 TRVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDDYRDADDCVYDLNGR 61
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 358 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 468
+RG+GFVE+E ED A N + G+T++V+ A
Sbjct: 45 HRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLA 81
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +1
Query: 523 YISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAIKHMN 678
Y+ L ++ + L+ F PFG+IT+ ++ +G GFV +E + AI +MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 475 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNIT 597
+P + H P +++ LPPD+ + ++ F FG++T
Sbjct: 331 SPNSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFGSLT 371
>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
Length = 141
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 493 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-GIGFVCYETRQQAEDA 663
S P T + + ISNL P ++ + + LF G + + ++ + G+ V Y T++ A A
Sbjct: 9 STTPQTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLRAGMAEVVYTTKEDAVTA 66
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 493 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-GIGFVCYETRQQAEDA 663
S P T + + ISNL P ++ + + LF G + + ++ + G+ V Y T++ A A
Sbjct: 214 STTPQTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLRAGMAEVVYTTKEDAVTA 271
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 361 RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 468
RG+GFV + ++ +KA F+G + G+ +KV+ A
Sbjct: 50 RGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKA 85
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 259 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLM 438
K+ +P T + L GK+ GY +V +++++DA++A AA N
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFGKVREVDF--KEGYAYVVFKENKDADRAVAALNNSEF 61
Query: 439 QG 444
G
Sbjct: 62 HG 63
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 277 IPELMTRDMMYALFSAMGKIESCKLIAN-----RGYGFVEYEKHEDAEKARAAFNGLLMQ 441
+ E +T +++ LF+ G ++ ++ + R GFV + + AE A NG +
Sbjct: 531 LSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMNGCDIL 590
Query: 442 GKTLKVSFA 468
GK ++ +A
Sbjct: 591 GKIVETKYA 599
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +1
Query: 229 GDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKL------IANRGYGFVEYEK 390
GD + +SP + + +IP + + F G + +L ++GY FVE+
Sbjct: 90 GDED-ELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFAC 148
Query: 391 HEDAEKARAAFNGLLMQGKTLK 456
E A+ A + +M G+ LK
Sbjct: 149 DEVAKIAADTMHNYMMFGRLLK 170
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +1
Query: 463 FALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV------SQGIG 624
FALL + S K ++I L + T E L FS +G I + + S+G G
Sbjct: 36 FALLPSKMSESEKL---RKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFG 92
Query: 625 FVCYETRQQAEDAIK 669
FV YE+ + +K
Sbjct: 93 FVTYESSDSVNEVLK 107
>SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = -1
Query: 507 VRLVADFVLRVEERKRHFQRLALHQ*AVECSPRLLSVLMFFILNKAVAAIRYQLAALYFT 328
+RLV V R+ + RH + L + + S R L +L+FF+L + I + +A+Y+
Sbjct: 395 IRLVR--VFRIFKLSRHSRGLQILGHTLRASLRELGLLIFFLL---IGVILFS-SAVYYA 448
Query: 327 HGREERVH 304
G E+ H
Sbjct: 449 EGGEKGTH 456
>SB_44333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 179 YRKQNSNKTHSTGRCSLHLNCKKRTKNKHK 90
YRK +NK S G + + KKRT++KHK
Sbjct: 171 YRKNYNNKI-SEGYDGIRMKKKKRTRHKHK 199
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +1
Query: 205 QNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIA------NRG 366
Q+ G D + T+L V P+ + + + F + G IE +++ N+G
Sbjct: 37 QSKHSGGKSDFQDQTTMTRLFV-ICPKDFNDEDLRSKFESFGDIEYVQIVRDHKTRENKG 95
Query: 367 YGFVEYEKHEDAEKA 411
YG+V++ K A A
Sbjct: 96 YGYVKFHKSSTAAMA 110
>SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)
Length = 396
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 373 FVEYEKHEDAEKARAAFNGLLMQGKTLKVSF 465
FVE+ + E A KA NG G+T+K +F
Sbjct: 351 FVEFTRMESAIKAVVDLNGRYFGGRTVKANF 381
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,262,637
Number of Sequences: 59808
Number of extensions: 526690
Number of successful extensions: 3402
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 3152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3376
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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