Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M08
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    28   0.83 
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    25   4.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   4.5  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   5.9  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   5.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   7.8  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 107  LVGXISSSLXTSQAGPIQRDTFHEACEE 190
            LV  +S  +  SQAGP  RDT H   +E
Sbjct: 1332 LVLQLSQLISGSQAGPFARDTIHALMDE 1359


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 49  EISRAPLSVLVRLCSILSFSCRRYIQFLXYITSWSN 156
           EIS A  SVL    +  SFS    I  L Y+ SW N
Sbjct: 122 EISNALWSVLTWKNTSCSFSTLMSILALVYVPSWIN 157


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 280  AVMFTVALLLSESNAWIPVIILLSAL 203
            AV+ +V  +LS +N W PVI  L  +
Sbjct: 2193 AVLLSVIKILSLNNVWFPVIFGLGLI 2218


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 180 RVKNYFYSSADNKIITGIQALDSLNSKATVN 272
           R  +Y  S++ NK++ G    D+L   AT+N
Sbjct: 119 RHHDYTNSNSSNKLVFGTPLEDALRRDATIN 149


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 123 PVPXVHHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAG 284
           P+   H    + NAI  +       Y  +D  +IT +   + LN  + VN + G
Sbjct: 618 PIILKHFDSKEKNAIFALGEKPQLMYYESDKLVITPLSCTEMLNISSYVNPSLG 671


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 201 SSADNKIITGIQALDSLNSKATVNITAGGVGYPY 302
           S A +K+ +        NS ATV++ A G  +PY
Sbjct: 309 SFAHSKLPSSANPNTPFNSTATVDVGAAGSHFPY 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,676
Number of Sequences: 5004
Number of extensions: 26545
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)