Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M08
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0543 - 18442571-18443111,18443232-18443426,18443507-184440...    29   2.5  
12_02_0703 + 22282219-22282430,22286054-22287620,22287751-222883...    28   4.4  
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891...    28   4.4  
07_01_0843 - 6851354-6851518,6851654-6852448                           27   5.8  
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    27   7.7  

>09_04_0543 -
           18442571-18443111,18443232-18443426,18443507-18444045,
           18444205-18444375,18444794-18445219
          Length = 623

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 371 LVDVYSDVVTQ-AGSAFTLHAHI-HVRVADTARSNVHGRLTVERVQR 237
           LVD+  +V +Q A  AF   A + H  V+ T RSN HG L   R  R
Sbjct: 51  LVDLSKEVPSQFARPAFQRDASLDHSLVSPTQRSNSHGGLAERRAAR 97


>12_02_0703 +
           22282219-22282430,22286054-22287620,22287751-22288371,
           22288434-22288484
          Length = 816

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -1

Query: 365 DVYSDVVTQAGSAFTLHAHIHVRVADTARSNVHGRLTVERVQRLDTCNNFIIGTAVEVV 189
           D +SD+V  +         +  +  D  RSN     TVE++   D CN  +   A++++
Sbjct: 416 DAWSDIVAASLQLLFRLVALPGKAGDKLRSNKRAINTVEKILGCDECNEKLHVLAIKIL 474


>03_05_0741 + 27287414-27287479,27287887-27287946,27288949-27289112,
            27289158-27289241,27290115-27290178,27291181-27291334,
            27291605-27291675,27292138-27292242,27292734-27292826,
            27293672-27293746,27294114-27294199,27294293-27294499,
            27294585-27294684,27294765-27294835,27294960-27295041,
            27295920-27296078,27296480-27296533,27296775-27296817,
            27297630-27297712,27298569-27298631,27298720-27298794,
            27299620-27299745,27300267-27300499,27300611-27300655,
            27300953-27301019,27302095-27302166,27302276-27302520,
            27302598-27302655,27302743-27302910,27303224-27303298,
            27303412-27303669
          Length = 1101

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
 Frame = -1

Query: 311  HIHVRVADTARSNVHGRLTVERVQRLDTCNNFIIGTAVEVVLHTLHERYRVVLDQLVMYX 132
            H+  R+  T+ S++H  + V R   LD C         +  L  LH R R  LD    Y 
Sbjct: 926  HVRTRLYFTSESHIHSLMNVLRYCNLDECLQGEDSLVCQSALDRLH-RTR-ELD----YM 979

Query: 131  RNWIXRRQENDRI---EHRRTRTD----RGAREISLREKT 33
             N + R  EN  +   + +R R +    RGA    L +KT
Sbjct: 980  SNIVLRMFENTEVPLEDEKRFRIEMTFSRGADLSPLEDKT 1019


>07_01_0843 - 6851354-6851518,6851654-6852448
          Length = 319

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 186 KNYFYSSADNKIITGIQALDSLNSKATVNITAGGVGYPYVNMRMKSERGSGLSY 347
           KNY   + D KI+ G + L +     T+  +AGGV     N+   +E+   L Y
Sbjct: 17  KNYLTWALDAKIMLGAKKLLNCIQDPTIATSAGGVN----NLPTSAEKNQALHY 66


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/50 (42%), Positives = 23/50 (46%)
 Frame = +3

Query: 78  CASVFNPIIFLSAXYPVPXVHHKLVQYNAIPFMKRVKNYFYSSADNKIIT 227
           C  VF   I L A YPVP        Y  +PF    +N  YS   NKIIT
Sbjct: 496 CIDVFVAAINLLA-YPVP--------YRFVPFGNNRENPSYSELINKIIT 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,703,380
Number of Sequences: 37544
Number of extensions: 177305
Number of successful extensions: 414
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)