Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M08
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42708| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_54120| Best HMM Match : Chlam_PMP (HMM E-Value=1.7e-06)             29   2.6  
SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)             29   2.6  
SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)          29   2.6  

>SB_42708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 209 GTAVEVVLHTLHERYRVVLDQLVMYXRNWIXRRQENDRIEHRRTRTDRGAREISLREKTC 30
           G A    L +L E+Y  + + L+ +  +   RRQ +     + TR+ R  +  S   K+C
Sbjct: 62  GAATRPGLQSLREKYPDLNENLIRFQSDQRERRQYSFATSTKETRSSRRTQNES---KSC 118

Query: 29  AXRRKFELQ 3
             R+K   Q
Sbjct: 119 KARQKVAAQ 127


>SB_54120| Best HMM Match : Chlam_PMP (HMM E-Value=1.7e-06)
          Length = 935

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 377 IVLVDVYSDVVTQAGSAFTLHAHIHVRVADTARSNVH-GRLTVERVQRLDTCNNFII 210
           ++ +D++   V+  G+  + +  IHV V+     NV    +TV R   L T N  ++
Sbjct: 144 VITIDIHLRNVSVVGNQLSNNGLIHVEVSSGISCNVDLNNVTVTRTNNLGTRNGVVV 200


>SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)
          Length = 1211

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 377 IVLVDVYSDVVTQAGSAFTLHAHIHVRVADTARSNVH-GRLTVERVQRLDTCNNFII 210
           ++ +D++   V+  G+  + +  IHV V+     NV    +TV R   L T N  ++
Sbjct: 136 VITIDIHLRNVSVVGNQLSNNGLIHVEVSSGISCNVDLNNVTVTRTNNLGTRNGVVV 192


>SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)
          Length = 788

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 202 AVPIIKLLQVSKRWTRSTVRRP*TLLRAVSAT 297
           A+PII L++V+ R  RSTVR     +R V  T
Sbjct: 219 AIPIISLIEVTVRLVRSTVRLVRGTVRLVRGT 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,283,788
Number of Sequences: 59808
Number of extensions: 201898
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)