Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M08
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical...    27   6.9  
AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical...    27   6.9  
AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical ...    27   6.9  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    27   6.9  
U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10c protein.
          Length = 922

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 156 YNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVG 293
           Y A+PF++R   Y+     +K    I     L  K    +  GG+G
Sbjct: 61  YEALPFVRRYFMYWMKHTFDKEKLFINTFQPLKHKPYYGVPCGGIG 106


>AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10b protein.
          Length = 930

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 156 YNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVG 293
           Y A+PF++R   Y+     +K    I     L  K    +  GG+G
Sbjct: 69  YEALPFVRRYFMYWMKHTFDKEKLFINTFQPLKHKPYYGVPCGGIG 114


>AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10a protein.
          Length = 959

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 156 YNAIPFMKRVKNYFYSSADNKIITGIQALDSLNSKATVNITAGGVG 293
           Y A+PF++R   Y+     +K    I     L  K    +  GG+G
Sbjct: 98  YEALPFVRRYFMYWMKHTFDKEKLFINTFQPLKHKPYYGVPCGGIG 143


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -1

Query: 188 LHTLHERYRVVLDQLVMYXRNWIXRRQENDRIEHRRTRTDRGAREI 51
           L  L+++Y+ V ++L    ++W   ++E   +E    R +   RE+
Sbjct: 56  LGKLNDKYKAVQEELKTMKQSWTQLKREKGVLETENRRLETAKREL 101


>U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical
           protein C28F5.4 protein.
          Length = 856

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 87  VFNPIIFLSAXYPVPXVHHKLVQYNAIPF 173
           VFN I FL +  P   +H +L + NA+ F
Sbjct: 358 VFNFIGFLKSSGPQKWIHDELAELNAVDF 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,248,576
Number of Sequences: 27780
Number of extensions: 150489
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)