Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M07
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    29   1.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    29   1.1  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   2.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   2.6  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   7.9  

>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
 Frame = +3

Query: 255 RLNFVITYKK*HIFLSTLTIRSQSVRLLNTLTHRQTTVNEVYHNKFARY----RMTVGCC 422
           RL  +I   +  IFLSTL I  +   L+N L++  +    ++ +  A      R + GCC
Sbjct: 43  RLKKLIKKAQKRIFLSTLYIGKEERELINCLSNALSNNPSLHVHILADQLRCTRESPGCC 102

Query: 423 ETSSFIFFIPRIEHK--INIFIIRNLVPIRCPTTPHIF 530
             S  +    +   +  I ++   NL  +R    PH F
Sbjct: 103 SASLLMQLKKKFPDRCEIKLYHTPNLRGLRKQLVPHRF 140


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 269 NNVQKITYFFININHPISERS-FAQYTNS 352
           +NV    Y FIN+NHP   RS F   TNS
Sbjct: 310 SNVTLQVYCFINVNHPSLNRSPFTLATNS 338


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/74 (25%), Positives = 39/74 (52%)
 Frame = -1

Query: 472 LILCSIRGIKKIKLEVSQQPTVIR*RANLLWYTSFTVVCL*VSVLSKRTL*DRMVNVDKK 293
           ++ C+++ + +I    SQ+P + + RA+ L++ +  V+    S++    L  R +N+   
Sbjct: 580 ILFCALQSLSEIANMFSQRPIIAKHRASALYHPAADVIS---SLIV--DLPFRFINI-SV 633

Query: 292 ICYFLYVITKLSRT 251
               LY +T L RT
Sbjct: 634 FSIVLYFLTNLKRT 647


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 309 TIRSQSVRLLNTL-THRQTTVNEVYHNKFARYRM 407
           +I +Q  RLL+ L  + + T++E+ H+KF  Y M
Sbjct: 724 SIGTQEQRLLSFLRVYEKNTLSEIAHHKFNEYEM 757


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 265 KLSRTLCALLIKILCYG-RFFP 203
           K+S   CA +++ L YG RFFP
Sbjct: 86  KMSAQSCACMVRTLLYGKRFFP 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,870
Number of Sequences: 5004
Number of extensions: 69018
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)