Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M06
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930...    29   4.2  
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262...    29   4.2  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    29   5.5  
12_02_0125 - 13949652-13949822,13949955-13950089,13950309-13950566     28   7.3  
06_03_0949 - 26262993-26263130,26263602-26263670,26263809-26264030     28   9.6  
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503...    28   9.6  

>10_08_0459 +
           18092656-18092724,18092827-18092886,18092970-18093038,
           18093134-18093178,18093706-18094332,18094424-18094597,
           18094688-18094991,18095070-18095161,18095253-18095319,
           18095407-18095478,18095613-18095830,18095979-18096113,
           18096225-18096520,18096603-18096774,18096860-18096958,
           18097048-18097179,18097273-18097373,18097460-18097649,
           18097713-18097751
          Length = 986

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 550 VKNNILNNFESCQRQFKIKQIKFTLSNNFYV 642
           VK  ILN  +SC   F+  ++ +T   NFY+
Sbjct: 48  VKKEILNR-KSCSHAFRYAKVNYTFDFNFYI 77


>05_06_0214 -
           26425100-26425922,26426008-26426058,26426183-26426256,
           26426344-26426441,26426547-26426671,26426724-26426957,
           26426992-26427037,26427101-26427152,26427331-26427367,
           26427521-26427637,26428287-26428352,26428439-26428518,
           26429102-26429311,26429650-26429739,26430093-26430182,
           26430280-26430411,26430876-26431094,26431203-26431286,
           26431543-26431656,26431857-26431914,26432535-26432602,
           26432847-26432962,26433495-26433574,26433839-26433912
          Length = 1045

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 146 CNGNGCRPIKLFSLHKRWLPKGLFQLRSELGELVNLREL 262
           C+G  C    +  +HK W   GL      L E   L +L
Sbjct: 330 CSGQKCSAQSILFMHKNWSSSGLLDKMKSLSERRKLEDL 368


>12_02_0506 -
           19794383-19794670,19795066-19795140,19795337-19798704,
           19799503-19799671,19799758-19799850
          Length = 1330

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 176 LFSLHKRWLPKGLFQLRSELGELVNLRELPTLDLAKAVLH 295
           L +L K +LPK        +G L NLREL  L + K   H
Sbjct: 767 LANLQKLYLPKPALSRVPHIGRLTNLRELNGLSVKKEEGH 806


>12_02_0125 - 13949652-13949822,13949955-13950089,13950309-13950566
          Length = 187

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 50  ADLLLSGYHRSKKSHPKLPLSLRYEIDISFLLCNGNG--CRPIKLFSLHKRWLPKGLFQL 223
           +D  + G HR K S P    +    +     +CN     C  +++ S+ KR+LP+  F L
Sbjct: 60  SDRCIHGLHRRKASVPLRQPTPGGALACMKEICNLKSKICNLLQVTSVGKRYLPQACFSL 119

Query: 224 RS 229
           R+
Sbjct: 120 RA 121


>06_03_0949 - 26262993-26263130,26263602-26263670,26263809-26264030
          Length = 142

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -2

Query: 371 AFRRKSLSYTPDVLSES*FPSGVRF 297
           AFRR +L+Y PDV  ES   SGV F
Sbjct: 67  AFRRLALTYHPDVSKES--DSGVHF 89


>03_06_0285 +
           32848085-32848988,32849057-32849245,32850136-32850311,
           32850569-32851141
          Length = 613

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 231 SERSWNRPLGNQRLCREKSLMGRQPLPLHNKNEISISYLRLS 106
           S  S++RP  +   C + +L  R+P   H+ +E+S   L +S
Sbjct: 537 SPYSYDRPAAHPLYCGQNTLAMREPYAYHHPSEVSSVGLGMS 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,571,440
Number of Sequences: 37544
Number of extensions: 326736
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)