Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M06
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_44047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 232  VR*AREPKGITNTGPSKSSASLNLTPDGNHDSL 330
            VR  RE  GITNTGP K  +  +L+  G+ D+L
Sbjct: 2371 VRLIREMMGITNTGP-KPPSVFSLSDGGHRDNL 2402


>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 450 ILQIHLHLQALVTILVECVEVFNTQRSL*TQITELHA 340
           +L++HL   A+ T    C E F T + L T +  +H+
Sbjct: 253 LLEVHLRRHAIKTKCKYCKEGFATHKELETHVLSVHS 289


>SB_44047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 232 VR*AREPKGITNTGPSKSSASLNLTPDGNHDSLRTSGV*LSDLRLK-ATLRVEHFDAFDK 408
           VR   EP  +T TGP+++  S +     N  SL    +  SD++ K   L  E+   FD 
Sbjct: 126 VRQLFEPSNVTTTGPARAFPSTDTLHSAN-VSLDPDSLLPSDIKAKFKALHHEYDQVFDA 184

Query: 409 N 411
           N
Sbjct: 185 N 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,908,904
Number of Sequences: 59808
Number of extensions: 395253
Number of successful extensions: 829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)