Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M06
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm recept...    29   2.8  
U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    29   5.0  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    29   5.0  

>U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm receptor
           protein 135 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
 Frame = -1

Query: 696 NLLHCRGVDPAHQLFSYCYIKIITKSEFNLFNFKLSLTGFEII*YVVFN*LPSLV*AIKR 517
           +L+H  G   A  L +     IITKSE  L N++ ++  F +   +V++ +  LV  +  
Sbjct: 12  HLIHYIGFVGAQSLNAVLVFLIITKSENLLGNYRYAMFVFTLC-SMVYSMVEILVQPVGH 70

Query: 516 YLFAKFLKF-HISVVKPLQVPVSILQ-IHLHLQALVTILVECVEVF 385
              + F+ F H S++         L  +H  L   V  L+ C  +F
Sbjct: 71  MKGSMFVVFMHSSILNATNPLAEFLTCLHCVLSGFVASLLACQFIF 116


>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +2

Query: 71  YHRSKKSHPKLPLSLRYEIDISFLLCNGNGCRPIKLFSLHKRWL--PKGLFQL 223
           Y R    + ++PL+L ++++++  LC+   C      S+  +++  PK +FQ+
Sbjct: 160 YRRGVWQYGRVPLTLTFQLEVAKRLCSPIACDTRSRISIMSQYVAEPKMVFQI 212


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
           trithorax-related protein LIN-59 protein.
          Length = 1312

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 119 YEIDISFLLCNGNGCRPIKLFSLHKRWL 202
           Y + I FL   GN   P++  SL ++WL
Sbjct: 850 YTLIIKFLKTKGNNPNPVEFVSLFRKWL 877


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
           lineage protein 59 protein.
          Length = 1312

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 119 YEIDISFLLCNGNGCRPIKLFSLHKRWL 202
           Y + I FL   GN   P++  SL ++WL
Sbjct: 850 YTLIIKFLKTKGNNPNPVEFVSLFRKWL 877


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,762
Number of Sequences: 27780
Number of extensions: 306464
Number of successful extensions: 675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)