Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M05
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.32 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   4.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   5.2  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.9  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    26   6.9  
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    25   9.2  

>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 635 YRILKQNLTSLNRILEWLVVEIE 567
           Y+I +QN+ SLN++ EWL+  +E
Sbjct: 141 YKINEQNVQSLNKVKEWLLKSLE 163


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 357 QKKHQKYFSSYTYSIRNLDDL 295
           Q KH    S Y YS+RN++ L
Sbjct: 925 QSKHTSLESQYNYSLRNIEQL 945


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 599 RILEWLVVEIEMIMIMVPSKRAHTSHYHQY*ICCT 495
           +ILEW   +  + + M P K    S Y +Y +C T
Sbjct: 740 KILEWKSTDDTINLPMNPHKSLEASLYEKYDLCIT 774


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 78  LWLYFTRGMDRTRSPEIARRQFFTMAVLFSFL 173
           +W +F     +     +  R +F  A+L+SFL
Sbjct: 701 IWQFFLLSRSKFAKINVIERSYFVFALLYSFL 732


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 21  RAYWAVRGQTRVFQRKTFFLWLYFTRGM 104
           ++ W VRGQ R F      LW+   R +
Sbjct: 429 KSIWEVRGQERNFLYSKIMLWVALDRAL 456


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 127 LLGDNFLQWLFYFLSSFKLNILWALNPR 210
           +LG  FL W+ ++ +S  +  LW LNPR
Sbjct: 119 ILG-RFLSWVPFYSTSKIVFWLWLLNPR 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,005
Number of Sequences: 5004
Number of extensions: 67659
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)