Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M05
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1206 - 11505450-11506403                                         29   5.4  
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203...    28   7.2  
08_02_1420 + 26942777-26942905,26944415-26944511,26944596-269449...    28   9.5  

>07_01_1206 - 11505450-11506403
          Length = 317

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 49  RAFFSGKHFSCGFISREGWTEHALLKLLGDNFLQW 153
           +A + G+ F+   ++R+ W +  +   + DNF+ W
Sbjct: 186 QAEYGGREFASHLLNRDVWADETVAMYVRDNFVFW 220


>07_01_0276 +
           2028983-2029070,2030084-2030151,2030317-2031246,
           2031334-2031415,2031544-2031609,2032606-2033304,
           2033422-2035424,2035599-2036173,2037060-2037223,
           2037306-2037365,2037475-2037839
          Length = 1699

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 745 YFFIALVGRRAYGPPDGEWLSSPMDFSHARGRAKPLP 635
           YF I L+ R A  PPD  +L       H R +A+P P
Sbjct: 533 YFGIDLLVRVANAPPDAPFLLLGDVMPHLRAKARPPP 569


>08_02_1420 +
           26942777-26942905,26944415-26944511,26944596-26944962,
           26945286-26945793
          Length = 366

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 34  LCEVRRAF-FSGKHFSCGFISREGWTEHALLKLLGDN 141
           L E+R  F  S   FSC FI REG  E      +GD+
Sbjct: 46  LKELRVYFKISSSEFSCHFICREGEAEQTSYHTVGDH 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,936,015
Number of Sequences: 37544
Number of extensions: 407625
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)