Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_M05
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51201| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.60 
SB_22162| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_51201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -3

Query: 402 LITITCSYLIIRQYNQKKHQKYFSSYTYSIRNLDDLTTVCANYFSLTSQKYHNRRHTVLY 223
           +I IT + +II  +  +KHQ+   SY Y ++++  +T V  +        +   RH ++ 
Sbjct: 6   IINITTTTIIIFYHRHQKHQQQQQSYLY-LKDIIRITNVTFSILPSPKNHHFYHRHQIIT 64

Query: 222 KKKV 211
            K+V
Sbjct: 65  IKEV 68


>SB_22162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +3

Query: 483 TSVISTTNLILMIVRRVSSLGRYHDHNHFYFYH 581
           T++ ++T +I++++  + +   +H H H Y +H
Sbjct: 144 TAITTSTTMIIIVIITIINPCYHHHHRHKYLHH 176


>SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 483 TSVISTTNLILMIVRRVSSLGRYHDHNHFYFYHKPLKNSV 602
           T ++  + +I+M +    +  R+H + H Y YH    N++
Sbjct: 21  TIIVILSIIIIMTINTTFNCHRHHHYYHIYDYHHQHTNAI 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,717,820
Number of Sequences: 59808
Number of extensions: 488414
Number of successful extensions: 1159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)