Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L21
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006720-4|AAF60448.1|  330|Caenorhabditis elegans Hypothetical ...    31   0.94 
Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical pr...    30   1.7  

>AC006720-4|AAF60448.1|  330|Caenorhabditis elegans Hypothetical
           protein Y17G9B.7 protein.
          Length = 330

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 361 STRTSLEPTRVHVKR*GEIWH-EYEGVRWSECMKLRVELFHITFLLILKLCSLRPTCYSR 537
           S  T  +P RVHV   GE W   + GVR  + +   +E+FH T L  L + +  P C + 
Sbjct: 85  SHHTVQKPIRVHVGFRGERWETPFFGVR--QFLNHLMEIFHQTKLDSLHISTADPECSNE 142

Query: 538 L 540
           L
Sbjct: 143 L 143


>Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical
           protein T11A5.7 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 30/90 (33%), Positives = 39/90 (43%)
 Frame = -2

Query: 299 SCSTRS*FNLNSLQNSRQCCKI*HVKSYVGLDSGIGSDRRCGCVLTWESYFRHFTPQKSF 120
           S STR  F L   +NS QC KI    S + L   I S    G +L        F P+   
Sbjct: 221 SLSTR--FQLEQNKNSMQCLKIYANTSTIFLLIQIPS---FGWILN-----EKFRPEYYL 270

Query: 119 ILLRLNCATRNFDCNCKFNFINKLFNYHNK 30
            L  LNCA  ++     F    K+F+ HN+
Sbjct: 271 ALQELNCAFPSYGIITVFLVSRKIFSVHNQ 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,728,139
Number of Sequences: 27780
Number of extensions: 334837
Number of successful extensions: 687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)