Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L15
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    32   0.005
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   1.4  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    24   1.4  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    23   3.3  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   4.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.8  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 315 KKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNDRLTSEVESLKALNERL 467
           K+ KN  AA+ SRD ++AK DE+  +    +  N  L    ++LK   E+L
Sbjct: 141 KRRKNNEAAKRSRDARRAKEDEIAIRCAFLERENCHLKFVTDTLKKELEKL 191


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 384 ESQIRD-FKEMNDRLTSEVESLKALNERLISENAALREVAAAQSVPGGQ 527
           E QI+  F+    +L  E++++K LNE+   + A  ++ AAA +    Q
Sbjct: 264 ERQIKIWFQNRRMKLKKEIQAIKELNEQ--EKQAQAQKAAAAAAAVAAQ 310


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 384 ESQIRD-FKEMNDRLTSEVESLKALNERLISENAALREVAAAQSVPGGQ 527
           E QI+  F+    +L  E++++K LNE+   + A  ++ AAA +    Q
Sbjct: 46  ERQIKIWFQNRRMKLKKEIQAIKELNEQ--EKQAQAQKAAAAAAAVAAQ 92


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 728 HVESFLQHLHQF 693
           H E  LQHLHQF
Sbjct: 122 HEEVKLQHLHQF 133


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 249 ASPSPSRKRRLDHLTWEEKMQRKKLKNRVAA 341
           A+P+   + R DHL  E  +  +++ N  AA
Sbjct: 15  AAPAEFYESRYDHLDVESILNNRRMVNYYAA 45


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 299 RKNAKKETEKSR--GSTDFSRQKEGQDGRNGESDK 397
           +  +KK+ + S+     +    K  QDG NGE  K
Sbjct: 442 KPESKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKK 476


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 299 RKNAKKETEKSR--GSTDFSRQKEGQDGRNGESDK 397
           +  +KK+ + S+     +    K  QDG NGE  K
Sbjct: 334 KPESKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKK 368


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,792
Number of Sequences: 336
Number of extensions: 2809
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)