Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_L15
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 36 0.006
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 34 0.024
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.29
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 30 0.39
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 29 0.51
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 29 0.51
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 29 0.51
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.51
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 29 0.90
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 28 1.2
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 28 1.6
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 28 1.6
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 28 1.6
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.7
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 27 2.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.7
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 27 3.6
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 3.6
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 4.8
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 4.8
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 4.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 8.4
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 297 EEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNDRLTSEVESLKALNERLISE 476
+E ++K +NR A + R RK+ + +E+Q+ KE++ T E + L+ +L E
Sbjct: 76 QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 135
Query: 477 NAALRE 494
L++
Sbjct: 136 LRILKD 141
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 33.9 bits (74), Expect = 0.024
Identities = 18/62 (29%), Positives = 35/62 (56%)
Frame = +3
Query: 264 SRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNDRLTSEVES 443
S +R + T EEK + +NR AA R RKK + +++++ + N+ L+++V +
Sbjct: 461 SSRRNSKNETDEEKRKSFLERNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSA 520
Query: 444 LK 449
L+
Sbjct: 521 LR 522
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 324 KNRVAAQTSRDRKKAKMDEMESQIRDFKEMNDRLTSEVESLK 449
KN TSR + DE+E Q++ ++N++ +++ LK
Sbjct: 130 KNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELK 171
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 29.9 bits (64), Expect = 0.39
Identities = 23/106 (21%), Positives = 40/106 (37%)
Frame = +3
Query: 219 EEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIR 398
EED D + + AS S KR +K +KK A + K K + E + +
Sbjct: 147 EEDEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKK 206
Query: 399 DFKEMNDRLTSEVESLKALNERLISENAALREVAAAQSVPGGQGPA 536
D + + + S + ++ I ++ + V G PA
Sbjct: 207 DKESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSSVEKVKEGNRPA 252
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 29.5 bits (63), Expect = 0.51
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 297 EEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNDRLTSEVESLKALNERLISE 476
+EK +R +NR+AA R +KK + E+E E + RL + L+ RL S+
Sbjct: 10 DEKRRRILERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEAFRLKSQ 69
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 29.5 bits (63), Expect = 0.51
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 375 DEMESQIRDFKEM---NDRLTSEVESLKALNERLISENAALREVA 500
D + QIR +KE+ + + ++ L+ NERL+SEN LR A
Sbjct: 12 DLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENIDLRTTA 56
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 303 KMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNDRLTSEVESLK 449
K K +NR AAQ R +KK + ++ Q+ + N L L+
Sbjct: 123 KQSMLKARNRQAAQKCRIKKKKYLQTLQDQVNYYTSENKELLQSANDLR 171
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.51
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 324 KNRVAAQTSRDRKKAKMDEMESQIRDFKEMNDRLTSEVESLKALNERLISENAAL 488
KN A + + + K+ E + FK+ + L EVE+LK E+ ++N L
Sbjct: 1359 KNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRL 1413
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 334 TRFFSFFLCIFSSHVRWSSRRFLD--GDGDATSRIISESSS 218
TRFF + S + +W++++F + D TS + +++SS
Sbjct: 695 TRFFRVIYIVLSKYTQWTTQKFFEEANKQDDTSEVQNDNSS 735
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 440 ELESFEREVD*RERSATRSGGGAERPGW 523
ELE+FE+E+ E S T++ G +++P +
Sbjct: 341 ELENFEKEIFKAEVSETKNNGNSDKPSF 368
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 1.6
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 195 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKM 374
+PN L+++ S+ L +P PS R L +E Q L QT+++ +M
Sbjct: 80 LPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQE--QTMLLVRHRQLQTAQN-YLTEM 136
Query: 375 DEMESQIRDFKEMNDRL-TSEVESL 446
E +I++ N+RL TS E+L
Sbjct: 137 KEALGRIKNELSTNERLDTSAREAL 161
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +3
Query: 303 KMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNDRLTSEVESLKALNERLIS-EN 479
K R+K + + RDR A D S E +T E +LNE+L+S +
Sbjct: 741 KRHRRKQSSSIPVLDLRDRSSAISDLSLSTASSVLEAQSLITPERPKRPSLNEKLLSLDG 800
Query: 480 AALREVAAAQSVPGGQGPAESTP 548
++R A QS + AE +P
Sbjct: 801 TSIR--LAGQSF-NYENSAEDSP 820
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 225 DSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAK 371
D + ++ S PS+K + D +EK + K K R A S + KK+K
Sbjct: 446 DVEETVETISEKPSKKEKKDK---KEKKKEKSKKKRSADDASEEVKKSK 491
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 195 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNR 332
+ N EE+ D + P S LDH + E++MQ+ KN+
Sbjct: 318 IKNQLFKSEEEKDPVGKQKLPLESSLSPLDHSSAEKEMQKAPAKNK 363
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +3
Query: 303 KMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNDRLTSEVESLKALNERLISEN 479
K+ +KKLK+ D+K ++E E +++ E ++ ++ S L E+ ++++
Sbjct: 4 KLSKKKLKSLEYRSKKFDKKSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQS 62
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/80 (20%), Positives = 38/80 (47%)
Frame = +3
Query: 237 ILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMN 416
+LDV SP S R + ++ ++ KK+ + R + ++E+Q F+++
Sbjct: 211 LLDVHSPDNSNHRTMLNINNSSPIKPKKIFKPNEVKNRISRLQKTFADLENQHHSFQQIC 270
Query: 417 DRLTSEVESLKALNERLISE 476
L +E+ + ++ +S+
Sbjct: 271 QTLRKRLENDSSTTKQRLSK 290
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Frame = +3
Query: 195 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSR----DRK 362
+ +N +K+E + + V+ RK RL E+++Q K+ N++ + + DR+
Sbjct: 445 ITSNSQLKDEITSLKQTVSESEAERK-RLFSSAQEKQLQMKETVNKLTSLQEQNNEFDRQ 503
Query: 363 KAKMDE----MESQIRDFKEMNDRLTSEVESLKALNERLISENAALRE 494
+ +E E ++ + +++ T + + L+ L E+L E L++
Sbjct: 504 LKEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQ 551
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = +3
Query: 219 EEDS-DMILDVA-SPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDR-----KKAKMD 377
EED D LD + SP S+K ++ + +E +R+K K + + +D+ K+ K+D
Sbjct: 108 EEDLVDKSLDSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLD 167
Query: 378 EMESQIRDFK 407
+ +Q R K
Sbjct: 168 DSHTQKRKRK 177
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 294 WEEKMQRKKLKNRVAAQTSRDRKKAKMDEM 383
WE+ + +A +TSRD KK K +++
Sbjct: 127 WEDDLASNSSPASIAKKTSRDSKKRKREDL 156
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 387 SQIRDFKEMNDRLTSEVESLKALNERLISENAALRE 494
S+ + F+++ RL K + ERL++EN +E
Sbjct: 411 SEYQGFQKLAARLNCSYADAKRIEERLVNENIIYKE 446
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = +3
Query: 297 EEKMQRKKLKNRVAAQTSRDRKKAKMDE----MESQIRDFKEMNDRLTSEVESLKALNER 464
++K ++KK K A +DRK K +E + S + + ND + + A +
Sbjct: 176 KDKKKKKKSKENDDAP-KKDRKTRKKEEKARKLASMLESENKDNDANAAPLNKTDAFKDG 234
Query: 465 LISENAALREVAAAQSVPGGQGPAE 539
L S + + P G PA+
Sbjct: 235 LPSGRLIFAYASGQKVAPDGSNPAD 259
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 258 SPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRD-FKEMNDRLTSE 434
+PS K + EEK+ + + + + K+ ++ + E+++R +EM L +
Sbjct: 381 NPSAKLEEERALHEEKLMKMEAEMKTIFSQKVQEKEDRLKQSENELRTRHREMKAALEKQ 440
Query: 435 VESLKALNERLISENAA 485
L RL+ AA
Sbjct: 441 KADLIDHKNRLMQAKAA 457
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 384 ESQIRDFKEMNDRLTSEVESLKALNERLISENAALREVAAAQSV 515
++ + + K ND LTS++ +L+ L EN L E + V
Sbjct: 456 QNNLEELKNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRV 499
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/32 (31%), Positives = 23/32 (71%)
Frame = +3
Query: 384 ESQIRDFKEMNDRLTSEVESLKALNERLISEN 479
ES++ + KE+N +L+ ++++L++ IS+N
Sbjct: 849 ESKVSELKEVNGKLSLDLKNLRSSLNVAISDN 880
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 360 KKAKMDEMESQIRD-FKEMNDRLTSEVES 443
K +K E ES ++D EMN RL ++ES
Sbjct: 510 KLSKQVEEESSMKDDLTEMNQRLKEQIES 538
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,434
Number of Sequences: 5004
Number of extensions: 46466
Number of successful extensions: 182
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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