Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L13
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4H615 Cluster: Putative uncharacterized protein; n=2; ...    35   2.2  
UniRef50_A5KCH3 Cluster: Pseudouridylate synthase 1, putative; n...    33   6.6  
UniRef50_Q00S21 Cluster: Chromosome 19 contig 1, DNA sequence; n...    33   8.7  

>UniRef50_A4H615 Cluster: Putative uncharacterized protein; n=2;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania braziliensis
          Length = 2085

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
 Frame = +2

Query: 347 IQTIIVITSITYCSMCLATSVHSIL*TMFEQIAFLPTWFLM-------AWLG 481
           I  + + +S+TY  +C+  +  ++L  M E + FLPT++L+       AWLG
Sbjct: 150 ISAMSISSSVTYALLCVYYACRTVLLFMVETVLFLPTYYLVERHDTPSAWLG 201


>UniRef50_A5KCH3 Cluster: Pseudouridylate synthase 1, putative; n=1;
           Plasmodium vivax|Rep: Pseudouridylate synthase 1,
           putative - Plasmodium vivax
          Length = 587

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 307 DQRAITNATSSTSIPRFYLVVSIVPHTSNLKKSTMCLS*HCFHFPYDVSC*KAS--SKGC 134
           D+ A  +AT++ + P      ++   T   KK    L+    H P D+ C      +K  
Sbjct: 158 DEAAAQSATTNEATPHS---AALAERTKKEKKFRQLLN---EHLPEDIRCFDMHRVTKSF 211

Query: 133 SQRLACYFSVYFYSYPFCIFSKLLSR 56
             R  C F +Y Y +P C+ S++  R
Sbjct: 212 DARKFCSFRLYEYLFPVCVLSEVAVR 237


>UniRef50_Q00S21 Cluster: Chromosome 19 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 19 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 2065

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 233 WDYRNNQIKTRNTCG*CGVRNCTLIEALVNGEAAATNKIQTIIVITSITYCSMC 394
           + Y N Q+        C  ++  LIE +V+   +A N++ + +   SITYCS C
Sbjct: 378 YTYSNAQLFNLTIKAPCAAKSSGLIETVVS---SAINRVSSSVNYDSITYCSRC 428


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,549,244
Number of Sequences: 1657284
Number of extensions: 11197027
Number of successful extensions: 29030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29016
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)