Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L13
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)           29   3.6  
SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_49566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)                    28   8.2  

>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 381  YVMLVITIIVCILFVAAASPLTNASISVQLRTPH 280
            + +++I +IV ILF      + NA  ++ L +PH
Sbjct: 926  FYIIIIVVIVLILFAVVYMTIINAKYALNLSSPH 959


>SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)
          Length = 315

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = -1

Query: 441 ICSNIVHRMLCTEVAKHILQYVMLVITIIVCILFVA 334
           + SN +HR++  + +  + Q V+++IT +VCILF +
Sbjct: 115 LISNDLHRLVLHQQSA-LSQKVLILITTVVCILFTS 149


>SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 396 KHILQYVMLVITIIVCILFVAAASPLTNASISVQLRTPHH 277
           + +L + + + TII+ I   + +S LT +S+S Q    HH
Sbjct: 16  ERVLAFTITITTIIIIITTSSPSSSLTPSSLSYQHHHHHH 55


>SB_49566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 210 RRCV*ADTVFTFRTTSRAKKQVPRVVASGLRAIFRYIFIRIHF---VYLVNYSPVLK 49
           R C+ +D V T  T  +A K   R + +      R++ I+IHF   +Y+V     LK
Sbjct: 26  RLCLESDNVVTGNTIEKASKNKLRFLGTRPPKRQRFLHIKIHFRSAIYVVFVDETLK 82


>SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -3

Query: 523 HHEEYSERTEEDADPQPRHQEPRGQKRYLFEHCS*NAVY*SCQTHTAIRNASNNYNSL 350
           HH++  +   +D D +PR Q+   Q++ +  + +      +  T+T     +NNYN++
Sbjct: 121 HHDD-DQDDHDDRDKRPRQQQQ--QQQQILTNTTNTITNTNTNTNTNTNTTNNNYNNI 175


>SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 544 ER*LR*THHEEYSERTEEDADPQPRHQEPRG 452
           +R  R    EE  E TEED + +P  +EP G
Sbjct: 72  QRLARREEEEEGRENTEEDGEERPSDEEPLG 102


>SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)
          Length = 542

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 549 TRSGSCGRHTTKNTANGLKRTQTPSHAIRNHVGRNAICSNIVHRMLCTE 403
           T + SC     K    G   T    H +R    RN++CSNI    +C +
Sbjct: 384 TAAFSCSETGEKVCHKGWYGTNCERHCVRT---RNSVCSNITGERICNK 429


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,285,005
Number of Sequences: 59808
Number of extensions: 365076
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)