Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_L12
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) 31 1.1
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 30 2.5
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7) 28 7.5
SB_25668| Best HMM Match : Sigma70_r1_1 (HMM E-Value=1.2) 28 7.5
SB_35228| Best HMM Match : Asparaginase_2 (HMM E-Value=8.7e-10) 28 10.0
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 28 10.0
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 28 10.0
>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
Length = 415
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 288 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 157
GSIF D VS NH L + R + L C+ER++G D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 211 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 336
Q+ D MYEV+I + +RK+ R+ D E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802
>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 205 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 342
GP + + +G W S R +T P KV + PGI NG Y
Sbjct: 84 GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130
>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1079
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 528 CSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPGYEW 406
C C R + FD GAC T C + + + E F + PGY W
Sbjct: 346 CFC-RKNHHRFDRFGACFT--CPNGMICSNETFTLAPGYYW 383
>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
Length = 225
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 301 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 453
+ I + GI + + FWV + S + G I W+DP+P V YY+
Sbjct: 1 LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50
>SB_25668| Best HMM Match : Sigma70_r1_1 (HMM E-Value=1.2)
Length = 449
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 410 SYPGLIPNLSQFTTSESAQAGVPQAPGKSKCHRLHL*QLHCTQHPLATLEATEETYPLRL 589
SY G + +FT +E+ + + + H + + + TQHPLA EE+ P +
Sbjct: 112 SYDGK-QEMKKFTKTEAVYSKALPLQQQRREHVEDI-EFNLTQHPLALFPHLEESLPPDV 169
Query: 590 EEPVYGLMFQEV 625
E V G++ E+
Sbjct: 170 FEDVVGVLDPEM 181
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 410 SYPGLIPNLSQFTTSESAQAGVPQAPGKSKCHRLHL*QLHCTQHPLATLEATEETYPLRL 589
SY G + +FT +E+ + + + H + + + TQHPLA EE+ P +
Sbjct: 298 SYDGK-QEMKKFTKTEAVYSKALPLQQQRREHVEDI-EFNLTQHPLALFPHLEESLPPDV 355
Query: 590 EEPVYGLMFQEV 625
E V G++ E+
Sbjct: 356 FEDVVGVLDPEM 367
>SB_35228| Best HMM Match : Asparaginase_2 (HMM E-Value=8.7e-10)
Length = 421
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 507 DCTCSSCIVRSTPWLPWRLRRK 572
DC ++ I STP +PW RR+
Sbjct: 155 DCEGNAAIAHSTPHMPWAQRRE 176
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 507 DCTCSSCIVRSTPWLPWRLRRK 572
DC ++ I STP +PW RR+
Sbjct: 318 DCEGNAAIAHSTPHMPWAQRRE 339
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 468 LGCHRLLENRSATDCTCSSCIV--RSTPWLPW 557
LGC RL + +C S C V + TPW W
Sbjct: 994 LGCERLGKPLEVVECFNSECPVHGKYTPWTGW 1025
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 293 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 421
P ++ K P L +G I+ GF+G ++AL ++LF G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,718,712
Number of Sequences: 59808
Number of extensions: 517564
Number of successful extensions: 1591
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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