Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L11
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     31   0.22 
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   3.6  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    26   6.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.2  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 267 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATMQQSTHILIDALML 446
           S   S+ T +  L  L+ S+L   QL  I     L RGK          S    +D L+L
Sbjct: 428 SDFLSVMTIHIHLLYLASSRLYNWQLRVIYSLLQLFRGKKRNVLRNRIDSYEYDLDQLLL 487

Query: 447 LSIYYAIFRF-LQTIYLFHAKLSVS 518
            +I + +  F L TIY+F+A  +++
Sbjct: 488 GTILFTVLIFFLPTIYVFYAAFALT 512


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
 Frame = +2

Query: 53  NGYQDPKHP----EXEVVSNW----PYRTNPLVLPGAKVRREPGPTESYLRHHPNPAMRA 208
           NG++D +        EVV N+    P   NPL    +  ++     E   R  P P ++A
Sbjct: 402 NGFEDQQQQLLGNSNEVVENYDVNPPLPLNPLP---SNTQQSESTYEYSARQLPKPPVQA 458

Query: 209 PPNHDYRDTLMKQKVL-----HKQFNSPINLYSEQNIANSIRQQTSPLPTNG 349
             N +       Q+ +     +   N+P    SEQ+   S+ Q+    P NG
Sbjct: 459 WQNENLSSNNKPQEYVGVENDYNFSNNPPTAMSEQSFHPSVSQKPMDTPENG 510


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 110 RTNPLVLPGAKVRR-EPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINL 286
           +++ L L GA V+R  P P      H  N A R   NH   +++  +     QF +P N 
Sbjct: 143 KSDILELLGAHVQRVTPAPIVDP-NHFVNTARRNAANHTVDESIPGKGYFANQFENPANW 201

Query: 287 YSEQN 301
            +  N
Sbjct: 202 QAHFN 206


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 104 PYRTNPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQ 265
           P    PL  P  ++ R+P P  S     P+    APP H  R+    + + H +
Sbjct: 44  PVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQ-REASPVKNIEHSE 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,948
Number of Sequences: 5004
Number of extensions: 54517
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)