Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L11
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16)                   29   5.0  

>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 11  PTSVTMSLNPNFFPNGYQDPKHPEXEVVSNWPYR-TNPLVLPGAKVRREPGPTESYLRHH 187
           P   T    P+  P   + P HP     S+ PY  T+   L G +  REP P  S+  H 
Sbjct: 474 PHHATSYNAPSGMPTHREPPPHPSF--ASHQPYHVTSCDALSGMQTHREPPPHPSFASHQ 531

Query: 188 P 190
           P
Sbjct: 532 P 532



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 62  QDPKHPEXEVVSNWPYR-TNPLVLPGAKVRREPGPTESYLRHHP 190
           + P HP     S+ PY  T+   L G +  REP P  S+  H P
Sbjct: 520 EPPPHPSF--ASHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 561


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 243 NKRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS-RGKSFTRNAT 404
           N    ++ ST +S  T  RT+ + S ++ R+C++   T GR+   RGK   +N+T
Sbjct: 147 NTSSSSNVSTTRSPVTVARTITSQSSNRQRVCEIFGNTSGRSRRVRGKRVQQNST 201


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +2

Query: 86   EVVSNWPYRTNPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQ--KVLH 259
            E  ++ P   +   +  A     PGP+ S     P P+ R P   +Y   + +Q  +VL 
Sbjct: 1296 EASTSAPSEAHDRTVVAAGFPLSPGPSTS-TNVTPLPSPRLPQRPNYEGDMREQLEQVLT 1354

Query: 260  KQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPH 367
            ++     +L S +         T+PLPT GH   PH
Sbjct: 1355 RESRERSSLRSSR--------PTAPLPTPGHRPEPH 1382


>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1222

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
 Frame = +2

Query: 182 HHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGR 361
           H P P M  PP   + D   K    H   N P++ + ++   + +R +   +     YG 
Sbjct: 549 HRPLPCMEGPPVEIHVDPTSKPTACHTPANIPLH-WQKRVYEDLLRDEALGVVERVPYGE 607

Query: 362 PHVVKRQVFY*KRHNA----TVDAHP 427
           P     ++   ++H+     TVD  P
Sbjct: 608 PVTWCHRMVVTRKHDGSPRRTVDLSP 633


>SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16)
          Length = 488

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 103 PVADNFXFRMFRILVSVREEVGVERHCXTCRDG 5
           PVADNF  R  +I V +   + V +    CR G
Sbjct: 59  PVADNFKDRFQQIQVEIEHMIAVLQQMELCRSG 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,816,778
Number of Sequences: 59808
Number of extensions: 432033
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)