Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L10
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.065
SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)                32   0.61 
SB_53693| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2)                  29   5.6  
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_943| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.5  
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 6/189 (3%)
 Frame = +3

Query: 96  TDCYKILGIFPSLDRTNYLTYRDLFKELANRNNDVTLISHFPMSDAPASYRDILLSDRHV 275
           +D  KI+G +P +  + Y+  R + +ELA R ++VTL+        P       +    V
Sbjct: 4   SDAAKIVG-YPMMAGSPYIGMRRIAQELAARGHEVTLLVSSIRKIKPTEGVTHAVYQVPV 62

Query: 276 YKGLSFESVIASEVSRVPFETLVATKAGNDD-----CKTLMNNNQVLHLIRTRPQYDVVL 440
            K   FE +++  ++      L ++K G        C+  +N+  V+  ++   ++D+++
Sbjct: 63  EKNY-FEEMVSRTINNGIISEL-SSKTGMGAALKLFCEATLNSTDVIDPLK---KFDLII 117

Query: 441 VESFNSDCGIALAANLSAPYIALNP-KPLQPWHYNRLGINFNAAYVTQTGLSYGKNPWFL 617
            +  +  CG  LA  L+   +   P  P  P  Y+  G +F  +YV            FL
Sbjct: 118 TDC-SMPCGAVLAEYLNLTRVDYCPGTPRIPLIYHFHGPSF-PSYVPLMMSGNTAKMNFL 175

Query: 618 DRVRGYILY 644
            RV+  ++Y
Sbjct: 176 QRVKNTLIY 184


>SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)
          Length = 187

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 26/105 (24%), Positives = 48/105 (45%)
 Frame = -1

Query: 529 GCKGFGFNAMYGALKFAANAIPQSLLNDSTSTTSY*GRVLIKCST*LLFMRVLQSSLPAF 350
           GC  +G +A  G        + +   +  T+ T     +   CS+ +    +  ++ P  
Sbjct: 21  GCGFYGNSATDGMCSKCWKDVLRRKQSSPTANTGIQASIQGSCSSMMTDGSLATAAAPVP 80

Query: 349 VATSVSKGTRDTSLAITDSKDKPLYTCLSLNKMSLYEAGASDIGK 215
           +AT+V+  +  TSL+  +S +           +S+ EAG+SDIGK
Sbjct: 81  MATAVATASSTTSLSSEESIE-------DRQPISMVEAGSSDIGK 118


>SB_53693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 641 VSYYKLGVLCWFTNHRSRVLI*IFRRQPSVSRN-ACVKCXFS 763
           V +Y  G  CW + +  +VL  IFR Q  V+ +  C  C  S
Sbjct: 82  VLHYNAGRRCWLSPYNDKVLDHIFRDQSDVNESPMCKDCLVS 123


>SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2)
          Length = 360

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 87  ILTTDCYKI-LGIFPSLDRTNYLTYRDLFKELANRNNDVTL 206
           +L  +C  I + + P   R++YL    L +ELA+R ++V++
Sbjct: 13  VLACECSGIKIAMMPQFGRSHYLVMSKLAEELASRGHEVSV 53


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 120 IFPSLDRTNYLTYRDLFKELANRNNDVTLISHFPMSDAPASYRDI 254
           +F  L+R    ++ ++FK + NR N+V  I    + +A     DI
Sbjct: 811 LFSKLERIGKGSFGEVFKGIDNRTNEVVAIKIIDLEEAEDEIEDI 855


>SB_943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 72  IFVTIILTTDCYKILGIFPSLDRTNYLTYRDLFKELANRNNDVTLIS 212
           +F+T++L   C K     P+L     LT+R  F  L +  +D+ L+S
Sbjct: 24  LFLTLLLKLPCSKYHVSCPALLPETTLTFRSSFCRLLSGYSDIKLLS 70


>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 107 ITVSC*YYCHENTNNCAFCHID 42
           +T  C YYCH + N  A CH D
Sbjct: 518 MTTRCFYYCHRHHNPLA-CHFD 538


>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +2

Query: 482 KFECAVHSIEPEAFTALALQSIRYQFQCSLCNPNRLIVRKKSLVPRPSKRLHIVSY 649
           K++C  H    ++ + L + +   +  C+ C PN + +  +S    PS   H++ +
Sbjct: 182 KWQCLRH----QSLSLLKVPNYSNKHYCAFCQPNNIFLIIRSAPKHPSTHRHVLDH 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,036,362
Number of Sequences: 59808
Number of extensions: 516304
Number of successful extensions: 1241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)