Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L08
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52640| Best HMM Match : Spot_14 (HMM E-Value=0.25)                  36   0.028
SB_38234| Best HMM Match : RuvB_C (HMM E-Value=7)                      30   2.4  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              29   4.2  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_21454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   28   7.3  
SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)                   28   9.6  

>SB_52640| Best HMM Match : Spot_14 (HMM E-Value=0.25)
          Length = 245

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +3

Query: 213 FSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLP 314
           + K+S++  +E F+K V+ M  TVL+P RLM++P
Sbjct: 9   YYKRSVVAVVENFLKTVDDMKATVLIPCRLMDIP 42


>SB_38234| Best HMM Match : RuvB_C (HMM E-Value=7)
          Length = 184

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
 Frame = +3

Query: 204 GAEFSKQSILNDMEKFVKMVNTMD------ETVLVPSRLMNLPQEGD 326
           G +F  +S    ++KF+K+++T+D         +VP+ LMN P  G+
Sbjct: 51  GTQFKYESNSAGLDKFIKLIDTVDLEGGPVGKPVVPAALMNRPTRGE 97


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 333 GHRHLPVANSSDGLVLRPSHPWC*PF*QISPCH--SGCSVLKIQHHHYGRFCAGCSCCFP 160
           G   +PV NSS  L  R SH        ISP    SG S+L  +HH     C   +C   
Sbjct: 677 GEAAIPVRNSSKSLCSRGSHSSTDSDSHISPSFTTSGQSLLSGKHHK----CGNKNCTSD 732

Query: 159 ILS 151
           ILS
Sbjct: 733 ILS 735


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 318 EGDDDPFSMFSMLNDLKTELLWSGGDSQEQVERGRRV 428
           EGD D FS F+ L      +L  GGD+  ++  GR V
Sbjct: 151 EGDGDEFSFFNSLWFCLASMLQQGGDATPKMLSGRIV 187


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = +2

Query: 527  CVSPSSTWFAPFSPPTHCRSSTTHEDLPRRSRSPCLDCDASLLI 658
            C S  ST   PF P   C SST     P  S  P +     LLI
Sbjct: 2247 CPSVCSTTCLPFCPSKCCTSSTVTPVQPTTSSCPAICIQVLLLI 2290


>SB_21454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 400 WLSPPDHSNSVFRSLSMENMLNGSSSPSCGKFIRRLGTKTVSSMV 266
           WLSPP  S++       + +L+   SP   K   R G+ T+SS +
Sbjct: 250 WLSPPSSSSTPLGDTPPQRLLSPHKSP---KLTPRKGSSTLSSSI 291


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 400 WLSPPDHSNSVFRSLSMENMLNGSSSPSCGKFIRRLGTKTVSSMV 266
           WLSPP  S++       + +L+   SP   K   R G+ T+SS +
Sbjct: 131 WLSPPSSSSTPLGDTPPQRLLSPHKSP---KLTPRKGSSTLSSSI 172


>SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 240 CHSGCSVLKIQHHHYGRFCAGCSCCFPI 157
           CH  C        H   F   CSCC PI
Sbjct: 380 CHGECLSSVKPFAHKSGFATSCSCCAPI 407


>SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)
          Length = 824

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +3

Query: 213 FSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGG 392
           F     +ND+++F+ MVN M +   +PS L NL     ++P         LK E  W+ G
Sbjct: 328 FPTPQTVNDLQRFMGMVNLMGK--FLPS-LANL-----NEPLRQL-----LKKENQWAWG 374

Query: 393 DSQEQ 407
           +SQ+Q
Sbjct: 375 ESQQQ 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,908,378
Number of Sequences: 59808
Number of extensions: 468304
Number of successful extensions: 1265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)