Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_L06
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa... 138 8e-34
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 31 0.23
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 28 1.2
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 28 1.2
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 4.8
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 6.4
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 6.4
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 25 8.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 8.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.5
>SPBP19A11.01 |||glycine decarboxylase complex subunit
H|Schizosaccharomyces pombe|chr 2|||Manual
Length = 169
Score = 138 bits (334), Expect = 8e-34
Identities = 64/128 (50%), Positives = 94/128 (73%)
Frame = +3
Query: 171 YYSTENKMRYYTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGA 350
YYST +++TK+HEWV +D ++GTVG++ YA +ALGEVVF++LP+ +S GD GA
Sbjct: 41 YYST----KHFTKEHEWVKVDGDVGTVGITSYAANALGEVVFVELPEPETTVSVGDGIGA 96
Query: 351 LESVKAAAEVYSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQP 530
+ESVK+A++VYSPVSGTVT N +L +P V+ S EGW+ +IKLS+ DE++ L++
Sbjct: 97 VESVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDELKSLLNDE 156
Query: 531 TYDNYLKE 554
+Y + KE
Sbjct: 157 SYAQFCKE 164
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 30.7 bits (66), Expect = 0.23
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 216 HVSWCSTSFCFQCCNT 169
H WC FC+ CCN+
Sbjct: 48 HCRWCGKLFCYNCCNS 63
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 1.2
Identities = 8/20 (40%), Positives = 17/20 (85%)
Frame = +3
Query: 468 GWLFRIKLSNRDEVQHLMDQ 527
GW+F ++ +++DE++ L+DQ
Sbjct: 510 GWVFSVERTSKDEIEMLLDQ 529
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +3
Query: 168 LYYSTENKMRYYTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESG 347
+Y S+++ R T H + N GTV ++ A G+VV + ++ SG
Sbjct: 62 IYPSSKSSGRG-TTNHSTIYTTINSGTVASTYTVTLADGDVVVKDIEPTAGTVTTTITSG 120
Query: 348 ALESVKAAAEVYSPVSGTV 404
+ E AE V GTV
Sbjct: 121 SHEFTTTLAEASGTVPGTV 139
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 433 VDSNAVFFSVTVPDTGLYTSAAAFTLSRAPLSSPADIS 320
+ +NA F TVP T L T+ AF L+ LSS +S
Sbjct: 97 ISANATDF--TVPQTNLETTGIAFQLTVNSLSSSNQLS 132
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 408 EKNTALESTPSLVNKSCYGEGWLFRIKLSNRD 503
+++++L T + KS Y E W I +S+RD
Sbjct: 142 DRHSSLNGTQIISYKSNYNEEWFTLIGISSRD 173
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 547 SRNLATDHSHSLGLDVAILCNNPYQKKILMLRRLHVTCXSILYDKSL 687
+R+ S+ + L I C+NPY K++ + L V+C D SL
Sbjct: 328 ARSCQNTISYPIALQCLIYCSNPYFKRLEL--ALKVSCAYGHIDSSL 372
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 96 AIRAATRFSRSAYSGYNAGCCRHALYYSTENKMRYYTKKHEWVSIDENIGTVGVSH 263
AIR ++ +AY Y+ + L +S + + Y K H+WV+ +E + T V +
Sbjct: 89 AIRGKV-YNVTAYLPYHPVGPKKILKHSGVDATKPYLKHHDWVNEEELLKTSFVGY 143
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 8.5
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -2
Query: 448 FTNEGVDSNAVFFSVTVPDTGLYTSAAAFTLSRAPLSSP--ADISWPTSGSCINTTSPNA 275
FT+ +S S ++P T + +A + S A S P D+S T S T P
Sbjct: 133 FTSSQTNSGHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPP 192
Query: 274 S*A*CDTPTVPMFSSIDTHSCF 209
+ + T+ S I + S F
Sbjct: 193 ASSTSSFSTITNTSMIPSSSSF 214
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -2
Query: 418 VFFSVTVPDTG-LYTSAAAFTLSRAPLSSPADISWPTSGSCINTTSPNAS 272
+++SV + G L T+ ++ ++S SS + S P+S S TTSP++S
Sbjct: 111 LYWSVYLTGNGVLQTTVSSSSVSSTTSSSSS--SSPSSSSTTTTTSPSSS 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,435
Number of Sequences: 5004
Number of extensions: 58715
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -