Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L06
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12241| Best HMM Match : GCV_H (HMM E-Value=0)                      144   9e-35
SB_57602| Best HMM Match : GCV_H (HMM E-Value=0)                      109   2e-24
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_2675| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   29   3.0  
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            29   5.2  
SB_2297| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              28   9.0  

>SB_12241| Best HMM Match : GCV_H (HMM E-Value=0)
          Length = 178

 Score =  144 bits (348), Expect = 9e-35
 Identities = 61/112 (54%), Positives = 86/112 (76%)
 Frame = +3

Query: 201 YTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGALESVKAAAEV 380
           YT KHEWV ++  IGT+GV+ YAQ  LG++V++QLP+VG + S  +E GALESVKAA+++
Sbjct: 57  YTPKHEWVVVENGIGTIGVTDYAQSNLGDIVYVQLPEVGDKFSMEEEFGALESVKAASDL 116

Query: 381 YSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQPTY 536
           YSP SG +TE N+ LE  PSL+NKS YG+GW+ +++LSN  E+  L+D+  Y
Sbjct: 117 YSPTSGKITEINSQLEEDPSLINKSPYGDGWIVKMELSNPSELDDLLDEEAY 168


>SB_57602| Best HMM Match : GCV_H (HMM E-Value=0)
          Length = 126

 Score =  109 bits (263), Expect = 2e-24
 Identities = 43/112 (38%), Positives = 76/112 (67%)
 Frame = +3

Query: 201 YTKKHEWVSIDENIGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGALESVKAAAEV 380
           YTK HEWVSI+ +I TVG++ +AQ  LG++V++++  + Q +   +  G +E+VK  +++
Sbjct: 9   YTKDHEWVSIEGDIATVGITDFAQKELGDIVYVEVETLDQTLDRDEVFGTVEAVKTVSDL 68

Query: 381 YSPVSGTVTEKNTALESTPSLVNKSCYGEGWLFRIKLSNRDEVQHLMDQPTY 536
           + P+SG + E N +LE+TP  VN   YG+GW+ +IK+S+  +++ L+    Y
Sbjct: 69  FLPLSGEIIEFNDSLETTPETVNSDPYGDGWMVKIKISDNSQIESLLSSEDY 120


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 18/61 (29%), Positives = 34/61 (55%)
 Frame = +3

Query: 240  IGTVGVSHYAQDALGEVVFIQLPDVGQEISAGDESGALESVKAAAEVYSPVSGTVTEKNT 419
            +  V +  Y +DA G+ +  +L D G+ I   D+ G L   ++  ++  P+S TVT +++
Sbjct: 832  VPVVKLDVYDKDA-GDRLTFELSDEGERIFTIDDEGQLIPTRSVNDITEPLSFTVTVRDS 890

Query: 420  A 422
            A
Sbjct: 891  A 891


>SB_2675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 473 PTFPVTRLIHQRRCRLQCCVLFCHRSRHRTVYF 375
           PT+ + RL+H R  R  CC     RS    +YF
Sbjct: 25  PTYDLLRLLHARGTRTPCCKRESVRSWRENIYF 57


>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
 Frame = -2

Query: 505 SSRFESLMRNS-QPSP*QDLFTNEGVDSNAVFFSVTVPDTGLYTSAAAFTLS---RAPLS 338
           S+    L R++ QP+    +F ++ + S+   F     +TGL+ S++A T +   R  ++
Sbjct: 702 STTSSGLFRSTTQPTTSSAVFGSQPLSSSGGLFGSQPTNTGLFGSSSAPTSTSPFRGSVN 761

Query: 337 SPADISWPTSG-SCINTTSPNAS 272
           +PA  + P+ G S    TSP AS
Sbjct: 762 TPAFGATPSFGSSSTQATSPFAS 784


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 403 TVPDTGLYTSAAAFTLSR-APLSSPADISWPTSGSCINTTS 284
           ++P+   Y    A ++S  AP+ SP D S+PT G+    TS
Sbjct: 833 SIPEPLPYKQVNALSISETAPICSPPDFSFPTLGNEKKVTS 873


>SB_2297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 652 HEDVATLVFSFGRDYYIGLQRLIPNYGYGQWPD 554
           HED+   V    R +  G+QR I N G+G  PD
Sbjct: 254 HEDIVYAVKGMVRGF--GIQRYIANLGHGMHPD 284


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 109 AARIAPLASILDPVVERVAEDATDAECRRQSNHRPA 2
           A R+A   + + PVVE + ED TDA+  R S    A
Sbjct: 220 ALRLAYSRAHVPPVVETLPEDPTDAQRDRHSRQEAA 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,387,329
Number of Sequences: 59808
Number of extensions: 464480
Number of successful extensions: 1161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)