Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_L03
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 176 2e-45
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 176 2e-45
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 47 2e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 28 0.90
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 28 0.90
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 2.7
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 3.6
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 3.6
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 4.8
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 6.3
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.4
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 176 bits (428), Expect = 2e-45
Identities = 78/99 (78%), Positives = 91/99 (91%)
Frame = +3
Query: 135 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 314
GAKNLY+++V G RLNRLPAA GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+D
Sbjct: 32 GAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKD 91
Query: 315 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 431
GV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 92 GVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Frame = +2
Query: 50 GRGGSAGAKFRISLGLPVGAVINCADNTGCKE----SVCDRCPRYQRSPEQTAG 199
GRG ++G K+R++LGLPV A++NCADN+G K SV R R P + G
Sbjct: 4 GRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCG 57
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 176 bits (428), Expect = 2e-45
Identities = 78/99 (78%), Positives = 91/99 (91%)
Frame = +3
Query: 135 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 314
GAKNLY+++V G RLNRLPAA GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+D
Sbjct: 32 GAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKD 91
Query: 315 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 431
GV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 92 GVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Frame = +2
Query: 50 GRGGSAGAKFRISLGLPVGAVINCADNTGCKE----SVCDRCPRYQRSPEQTAG 199
GRG ++G K+R++LGLPV A++NCADN+G K SV R R P + G
Sbjct: 4 GRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCG 57
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 46.8 bits (106), Expect = 2e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Frame = +3
Query: 201 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 353
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 354 VNNKGEMKGSAITGPVAKE 410
VN + E G+ I VA E
Sbjct: 91 VNKECEPLGTRILSVVANE 109
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.9 bits (59), Expect = 0.90
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 117 TAPTTQGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRK 296
T PT KN + I + I+ + +P+A G I+ K G + ++P + RK
Sbjct: 47 TQPTKSALKNAHFITLTEIQKQC--IPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRK 104
Query: 297 PFRRRDGV 320
+ DG+
Sbjct: 105 KWTSLDGL 112
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 27.9 bits (59), Expect = 0.90
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -3
Query: 352 MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 173
+ ALSS+Y S L +T +T SS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 172 IPWTA 158
P +A
Sbjct: 837 TPLSA 841
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 2.7
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 234 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 344
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 3.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 382 EPFISPLLLTMTPALSSKYINTPS 311
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -3
Query: 424 HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 272
+ + H GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 963 YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 430 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 293
R H+ AH+ AEP ++P++ + P+++ +TPS L F
Sbjct: 60 RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 219 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 350
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 341 IVLKVYKYSITPSERFPLPDDHCRHYLFPEFR 246
+V +++++ E FPLP LFP R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -2
Query: 353 YDTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSV 186
Y+TR + K + +E PLP LF E F C + G QS+
Sbjct: 11 YNTRNMEKESSKDLVQNEDTPLPVQKISMSLFHEIVFVFIACTAQLMTQAGLGQSI 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,415
Number of Sequences: 5004
Number of extensions: 42887
Number of successful extensions: 119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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