Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_L03
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 184 5e-47
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 184 5e-47
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 184 5e-47
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 60 7e-10
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 31 0.51
03_02_0739 + 10834581-10835927 30 0.90
03_05_0291 - 22837412-22838128 29 1.6
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 2.7
02_02_0500 - 10993675-10994067,10994434-10995738 29 2.7
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 3.6
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 28 4.8
11_06_0538 + 24759030-24759379,24759380-24759488,24759604-247596... 27 6.3
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 27 6.3
02_04_0663 + 24820745-24821065,24821415-24821861,24821949-248223... 27 6.3
11_04_0068 - 13116037-13116414,13116501-13116947,13117026-131177... 27 8.4
09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458 27 8.4
05_07_0068 - 27469929-27471050 27 8.4
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 27 8.4
02_02_0607 - 12088810-12089105,12089200-12090208 27 8.4
01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708 27 8.4
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 184 bits (447), Expect = 5e-47
Identities = 81/99 (81%), Positives = 95/99 (95%)
Frame = +3
Query: 135 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 314
GAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKD 92
Query: 315 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 431
GV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 93 GVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 61.7 bits (143), Expect = 3e-10
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +2
Query: 38 MSNXGRGGSAGAKFRISLGLPVGAVINCADNTGCK 142
MS GRGGSAG KFR+SLGLPV A +NCADNTG K
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAK 35
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 184 bits (447), Expect = 5e-47
Identities = 81/99 (81%), Positives = 95/99 (95%)
Frame = +3
Query: 135 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 314
GAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKD 92
Query: 315 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 431
GV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 93 GVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 61.7 bits (143), Expect = 3e-10
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +2
Query: 38 MSNXGRGGSAGAKFRISLGLPVGAVINCADNTGCK 142
MS GRGGSAG KFR+SLGLPV A +NCADNTG K
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAK 35
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 184 bits (447), Expect = 5e-47
Identities = 81/99 (81%), Positives = 95/99 (95%)
Frame = +3
Query: 135 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 314
GAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+D
Sbjct: 50 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKD 109
Query: 315 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 431
GV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 110 GVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
Score = 58.4 bits (135), Expect = 3e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +2
Query: 50 GRGGSAGAKFRISLGLPVGAVINCADNTGCK 142
GRGGSAG KFR+SLGLPV A +NCADNTG K
Sbjct: 22 GRGGSAGNKFRMSLGLPVAATVNCADNTGAK 52
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 60.5 bits (140), Expect = 7e-10
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Frame = +3
Query: 135 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVIRQRKPFR 305
GAK V+ +Q ++G+ A GD I+ +VK+ +P + K V+ VV+R
Sbjct: 65 GAKR--VMCIQSLRGK----KGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRG 118
Query: 306 RRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 410
R DG I F+DNA V+VNNKGE+ G+ + GPV E
Sbjct: 119 RNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/77 (25%), Positives = 28/77 (36%)
Frame = +2
Query: 50 GRGGSAGAKFRISLGLPVGAVINCADNTGCKESVCDRCPRYQRSPEQTAGGRFRGHDCGH 229
G GGS+ +GL + + N G C C RS GG + G + G
Sbjct: 178 GHGGSSSIGSGSGVGLGATSGVGAGSNVG-PSGGCSTCGSGSRSGSGAGGGSYSGSNSGS 236
Query: 230 SQKG*T*TPEKGNAGSG 280
S + + GSG
Sbjct: 237 SSSSGSGSNSNSIGGSG 253
>03_02_0739 + 10834581-10835927
Length = 448
Score = 30.3 bits (65), Expect = 0.90
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 171 YLGQRSHTDSLHPVLSAQLITAPTGRPRE--IRNFAPAEPPRPXLDILLYQNFES 13
Y +RS + HP A++ AP GRPR + APA P P D LL + F++
Sbjct: 117 YDARRSAWLAAHPEFPARV--APAGRPRVLVVTGSAPARCPDPDGDHLLLRAFKN 169
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 445 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 332
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 350 DTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 213
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -3
Query: 394 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 227
P EP I+ + ++PA+ +T S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 226 ATIMSPEPAA 197
+ EP A
Sbjct: 285 FKPIDEEPMA 294
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 333 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 419
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 305 SERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQS 189
S R PLP+D C Y+ ++R + H+ G R S
Sbjct: 25 SSRVPLPEDTCDSYVEQKYRCYIRTLKGCHISGRNRLDS 63
>11_06_0538 +
24759030-24759379,24759380-24759488,24759604-24759692,
24760179-24760287,24760370-24760471,24760564-24760628,
24760830-24760936,24761023-24761087,24761163-24761217,
24761305-24761465
Length = 403
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 361 LLTMTPALSSKY-INTPSRLLNGFRCLMTT--AGITFFRSSGLPFLTVATIMSPEPAAGS 191
LLT P + + SRL R L AG+ FF S+ + + I+ P P++
Sbjct: 37 LLTQRPCVEGTMTMGEQSRLPESLRLLDAAFDAGVNFFDSAEMYYYAPLLILPPPPSSFP 96
Query: 190 LFR 182
LF+
Sbjct: 97 LFQ 99
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 141 LHPVLSAQLITAPTGRPREIRNFAPAEPPRP 49
L P S+ L TAP P + + FAP PP P
Sbjct: 327 LAPNASSSLFTAPV--PADRQQFAPPPPPSP 355
>02_04_0663 +
24820745-24821065,24821415-24821861,24821949-24822317,
24822324-24822835,24822914-24823084,24823284-24823434,
24823664-24823702
Length = 669
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 129 LSAQLITAPTGRPREIRNFAPAEPP 55
++A+ TAP GRP + FAP+ PP
Sbjct: 345 VTARPTTAPGGRPPKRPAFAPSAPP 369
>11_04_0068 -
13116037-13116414,13116501-13116947,13117026-13117757,
13118235-13118348
Length = 556
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 129 LSAQLITAPTGRPREIRNFAPAEPP 55
++A TAP GRP + FAP+ PP
Sbjct: 514 VTASPTTAPGGRPPKRPAFAPSAPP 538
>09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458
Length = 470
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 144 SLHPVLSAQLITAPTGRPREIRNFAPAEPPRPXL 43
SLH + A +I GR FAP E P+P L
Sbjct: 370 SLHLLPIASIIAPQMGRITSTSLFAPQEQPKPVL 403
>05_07_0068 - 27469929-27471050
Length = 373
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 268 ITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPC-VVGAV 116
+T +S+G P L + PA+ P+T ++ RF A C V+GA+
Sbjct: 44 VTLVQSAGFPLLVAGALAGGRPASAPR------PFTWLSRRFLAVCLVIGAL 89
>05_01_0029 +
187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 294 KPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKEC-ADLWP 428
KP D V + DN GV+V+ G GS+ +C A+++P
Sbjct: 214 KPLSGGDEVMLLV-DNVGVVVDRSGHPVGSSFVFNTTPDCIAEVYP 258
>02_02_0607 - 12088810-12089105,12089200-12090208
Length = 434
Score = 27.1 bits (57), Expect = 8.4
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -3
Query: 430 RGHRSAHSLATGPVMAEPFISPLLLTMTPALSSKYIN---TPSRLL-NGFRCLMTTAGIT 263
RG +A + V A+ F + + L + P +S + PS+L NG+R L A +
Sbjct: 150 RGGGAAAAAVPICVYAQAFAAGMRLPLHPFVSDALAHFGIAPSQLAPNGWRVLAGFAVLC 209
Query: 262 FFRSSGLPFLTV 227
FR G P L V
Sbjct: 210 HFRGVGAPSLPV 221
>01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708
Length = 488
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 295 FRCLMTTAGITFFRSSGLPFLTVA-TIMSPEPAAGSLFRRPLIPWTAITYRFFAPCVVGA 119
+R L I F S L + + TI +P P+ ++ +R + A+T F+ C G+
Sbjct: 247 WRSLQAFGDIAFAYSYSLILIEIQDTIRAPPPSESAVMKRATVVSVAVTTVFYMLC--GS 304
Query: 118 VDYCS 104
+ Y +
Sbjct: 305 MGYAA 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,160
Number of Sequences: 37544
Number of extensions: 332848
Number of successful extensions: 1074
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -