Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L03
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          126   1e-29
SB_42929| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)                    29   2.1  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          27   6.5  
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)               27   8.6  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  126 bits (304), Expect = 1e-29
 Identities = 59/77 (76%), Positives = 68/77 (88%)
 Frame = +3

Query: 135 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 314
           G KNLY+IAV+GIKGRLNRLPAA SGDM++ATVKKGKPELRKKVMPAVVIRQRK +RR++
Sbjct: 52  GGKNLYIIAVKGIKGRLNRLPAAASGDMVLATVKKGKPELRKKVMPAVVIRQRKAYRRKN 111

Query: 315 GVFIYFEDNAGVIVNNK 365
           GVF+YFE N  V V  +
Sbjct: 112 GVFLYFEANIKVRVRKQ 128



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +2

Query: 50  GRGGSAGAKFRISLGLPVGAVINCADNTGCK 142
           GRGG++G KFRI+LGLPVGAVINCADNTG K
Sbjct: 24  GRGGTSGGKFRIALGLPVGAVINCADNTGGK 54


>SB_42929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 159 RSHTDSLHPVLSAQLITAPTGRPREIRNF 73
           R HTDSL P  S QL   P GR   +  F
Sbjct: 30  RRHTDSLQPYRSGQLNFVPEGRQPRLSQF 58


>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
          Length = 446

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 116 NCADNT-GCKESVCDRCPRYQRSPEQTAGGRFRGH 217
           N  DNT  CK   C RC +   + EQ  G  F  H
Sbjct: 205 NIPDNTCRCKPDPCPRCEKRAYAAEQVLGAGFNWH 239


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 380  ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 249
            A  FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714


>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 371 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 249
           FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 2   FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 403 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 263
           AT  V A    + L  T+ PAL++K+IN  +R  N  + L+    +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232


>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
          Length = 192

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 380 ALHFALVIDYDTRIVLKVYK-YSITPSE 300
           AL FAL + YDT+I++   K YSI+P E
Sbjct: 137 ALLFALYLVYDTQIMMGGGKMYSISPEE 164


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 83  ISLGLPVGAVINCADNTGCKESVC 154
           +S+G+P+ +V+NC   T C   VC
Sbjct: 134 LSVGIPLLSVLNCLSVTFCLSIVC 157


>SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 41  SNXGRGGSAGAKFRISLGLPVGAVINCADNTGCKESVCDRCPRYQR 178
           S  GR   +GA    +  LPV       +  GC  SV  RC RY R
Sbjct: 38  SERGRERESGAYGSNAKSLPVLLSFGREEGGGCGASVVLRCYRYAR 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,309
Number of Sequences: 59808
Number of extensions: 368073
Number of successful extensions: 923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)