Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_L03
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 182 2e-46
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 29 1.9
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 29 1.9
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 29 1.9
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 29 1.9
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 29 1.9
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 4.3
L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome regu... 27 5.7
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z70307-11|CAA94337.1| 488|Caenorhabditis elegans Hypothetical p... 27 10.0
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 27 10.0
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 182 bits (442), Expect = 2e-46
Identities = 84/99 (84%), Positives = 91/99 (91%)
Frame = +3
Query: 135 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 314
GAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELRKKV+ VVIRQRK FRR+D
Sbjct: 33 GAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKD 92
Query: 315 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 431
G FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 66.5 bits (155), Expect = 1e-11
Identities = 36/61 (59%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +2
Query: 38 MSNXGRGGSAGAKFRISLGLPVGAVINCADNTGCKE----SVCDRCPRYQRSPEQTAGGR 205
MS GRGG++GAKFRISLGLPVGAV+NCADNTG K SV R R P G
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60
Query: 206 F 208
F
Sbjct: 61 F 61
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 193 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSXIRHFVVS 26
SL RRPL +T+ + C + V + + T G+ E R T+ + V+S
Sbjct: 267 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 322
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 193 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSXIRHFVVS 26
SL RRPL +T+ + C + V + + T G+ E R T+ + V+S
Sbjct: 262 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 317
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 193 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSXIRHFVVS 26
SL RRPL +T+ + C + V + + T G+ E R T+ + V+S
Sbjct: 267 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 322
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 193 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSXIRHFVVS 26
SL RRPL +T+ + C + V + + T G+ E R T+ + V+S
Sbjct: 262 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 317
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 193 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSXIRHFVVS 26
SL RRPL +T+ + C + V + + T G+ E R T+ + V+S
Sbjct: 267 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 322
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 193 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSXIRHFVVS 26
SL RRPL +T+ + C + V + + T G+ E R T+ + V+S
Sbjct: 262 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 317
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 356 DYDTRIVLKVYKYSITPSERFPL 288
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 3 protein.
Length = 504
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 123 PTTQGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 287
P T+ AK+L IAV+ IK +L L + ++ V + P+ RK++ V+ +
Sbjct: 23 PATEPAKDLNAIAVENIKEQLAALDK--GEEHLITRVLQVLPKTRKQINDNVLYK 75
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 470 NVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 357
++ S RAR+ P + F YRPC R L + ++
Sbjct: 86 SIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 138 HPVLSAQLITAPTGRPREIRNFAPAEP 58
HPV++ Q T P G P I+ P P
Sbjct: 1606 HPVITPQTQTIPEGDPARIQCTVPGNP 1632
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 138 HPVLSAQLITAPTGRPREIRNFAPAEP 58
HPV++ Q T P G P I+ P P
Sbjct: 1699 HPVITPQTQTIPEGDPARIQCTVPGNP 1725
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 138 HPVLSAQLITAPTGRPREIRNFAPAEP 58
HPV++ Q T P G P I+ P P
Sbjct: 1699 HPVITPQTQTIPEGDPARIQCTVPGNP 1725
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 138 HPVLSAQLITAPTGRPREIRNFAPAEP 58
HPV++ Q T P G P I+ P P
Sbjct: 1606 HPVITPQTQTIPEGDPARIQCTVPGNP 1632
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 138 HPVLSAQLITAPTGRPREIRNFAPAEP 58
HPV++ Q T P G P I+ P P
Sbjct: 1699 HPVITPQTQTIPEGDPARIQCTVPGNP 1725
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 138 HPVLSAQLITAPTGRPREIRNFAPAEP 58
HPV++ Q T P G P I+ P P
Sbjct: 1699 HPVITPQTQTIPEGDPARIQCTVPGNP 1725
>Z70307-11|CAA94337.1| 488|Caenorhabditis elegans Hypothetical
protein C39E9.10 protein.
Length = 488
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 95 DPGRYGISLPRN--HHVXX*TFCCIKILKASAG 3
D R+G + P++ H + T+CC+ +L SAG
Sbjct: 405 DAIRHGSTYPKDQYHSLVSATYCCVALLLLSAG 437
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 138 HPVLSAQLITAPTGRPREIRNFAPAEP 58
HPV++ Q T P G P I+ P P
Sbjct: 1698 HPVITPQTQTIPEGDPARIQCTVPGNP 1724
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,814,492
Number of Sequences: 27780
Number of extensions: 259828
Number of successful extensions: 690
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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