Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_L03
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    27   0.14 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   0.77 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 6   GRCFQNFDTTKCLXX-DVVVPRERNSVSPWVSQWEQ*STAPTTQGAKNLYVIAVQGIKGR 182
           G    NF+T+  +   +   P++ ++ +P VSQ     TAP  Q     YV    G + +
Sbjct: 40  GNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQ 99

Query: 183 LNRLPAA 203
            + +P A
Sbjct: 100 GSHIPTA 106


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = -2

Query: 281 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 183
           D C  Y +    +T  DCG    P   +R   Q
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQ 503


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = -2

Query: 281 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 183
           D C  Y +    +T  DCG    P   +R   Q
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQ 593


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 154 TYRFFAPCVVGAVDY 110
           T RF+  CVV A DY
Sbjct: 467 TTRFYTACVVEAFDY 481


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +3

Query: 93  VSQWEQ*STAPTTQGAKNL---YVIAVQGIKG 179
           V Q EQ   AP T G KN+   +++   GI G
Sbjct: 805 VQQCEQLEKAPNTLGLKNMAGVFIVVGVGIIG 836


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 205 VPGT*LWPQSKRVNLNSGKR--*CRQWSSGSGNRS 303
           +P T LW ++ R+ +++ K+    + WS  S N +
Sbjct: 439 IPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNA 473


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 259  FRSSGLPFLTVATIMSPEPAAGSLFRRPLIP 167
            F  S +PF++   I++  P +     RP+IP
Sbjct: 1034 FHYSVVPFVSNHDILNLRPLSMEKGTRPMIP 1064


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 293 PLPDDHCRHYLFPEFRFTLFD 231
           PL +DH  HY  P      FD
Sbjct: 199 PLKEDHDDHYGVPTLEELGFD 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,573
Number of Sequences: 438
Number of extensions: 3162
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)