Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_L02
(784 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 8e-24
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07) 65 7e-11
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 58 1e-08
SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 55 6e-08
SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 36 0.037
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_56448| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031) 29 5.6
SB_21748| Best HMM Match : TPR_1 (HMM E-Value=0) 28 7.4
SB_52873| Best HMM Match : Oleosin (HMM E-Value=3) 28 9.8
SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015) 28 9.8
SB_25161| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 89.0 bits (211), Expect(2) = 8e-24
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Frame = +2
Query: 425 MSAPCEYYPHFD--MDESYNLTVGANSQMTSLSVWGMMRAFESWTHLLYFTDDSKEIRIN 598
++ P E+ P ++ + + L V L + E+++ +++ ++D
Sbjct: 204 LTFPDEFVPCYNPNLPKIQRLEVTVKEDYEPLKIDNNEACLETFSQIVHQSEDGMYYA-K 262
Query: 599 KTEIHDFPQYKHRGLLLDTGRHYLSLNTIXKTLDAMSINKMNVLHWHIXDDQSFPYKSEI 778
+I D+P++ HR ++DT RHYL L+ I K LDAMS K NVLHWH+ DDQSFP++S+
Sbjct: 263 GNKIEDYPRFHHRAFMIDTSRHYLKLSIIKKFLDAMSYAKFNVLHWHVVDDQSFPFQSQT 322
Query: 779 LP 784
P
Sbjct: 323 FP 324
Score = 39.5 bits (88), Expect(2) = 8e-24
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 176 RGEVWPKPQKETKSDYFYLFRPDVIQIEIVNKKCNLLNETIERYTEI 316
+G +WPKPQ E + Y P +IE++ K ++L + RY ++
Sbjct: 158 QGSIWPKPQHEQPTGQLYSLLPSEFRIEVLCKNSDVLQAAVIRYQKL 204
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/57 (21%), Positives = 24/57 (42%)
Frame = +2
Query: 176 RGEVWPKPQKETKSDYFYLFRPDVIQIEIVNKKCNLLNETIERYTEIWQRQYMIVKR 346
+G +WP PQ + + P+ I K ++L + RY + + + K+
Sbjct: 47 QGSIWPNPQAQKPDGKVFSLLPNKFSFSINGKTSDVLKAAVNRYMNLTFPDFTVTKK 103
>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
Length = 228
Score = 64.9 bits (151), Expect = 7e-11
Identities = 28/59 (47%), Positives = 40/59 (67%)
Frame = +2
Query: 608 IHDFPQYKHRGLLLDTGRHYLSLNTIXKTLDAMSINKMNVLHWHIXDDQSFPYKSEILP 784
I D P + HRGL+LDTGR + ++ + TLDAMS K+NVLH+H+ D F +S++ P
Sbjct: 47 ISDKPSFVHRGLMLDTGRRFFPMDLLYNTLDAMSYVKLNVLHFHLSDLCRFSVESKLFP 105
>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 1788
Score = 57.6 bits (133), Expect = 1e-08
Identities = 31/98 (31%), Positives = 50/98 (51%)
Frame = +2
Query: 467 ESYNLTVGANSQMTSLSVWGMMRAFESWTHLLYFTDDSKEIRINKTEIHDFPQYKHRGLL 646
E+Y+L + + L+ F L+ D KE + I D P+Y +RG+
Sbjct: 1063 EAYSLEIKVAEKEIKLTGSHASGVFYGVQTLIALAD--KENTVPMVTIKDAPRYGYRGMH 1120
Query: 647 LDTGRHYLSLNTIXKTLDAMSINKMNVLHWHIXDDQSF 760
LD GR+++ + K LDAM+ KMN H+H+ DD+ +
Sbjct: 1121 LDVGRNFMEKAAVLKLLDAMATYKMNKFHFHLTDDEGW 1158
>SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 804
Score = 55.2 bits (127), Expect = 6e-08
Identities = 23/64 (35%), Positives = 41/64 (64%)
Frame = +2
Query: 593 INKTEIHDFPQYKHRGLLLDTGRHYLSLNTIXKTLDAMSINKMNVLHWHIXDDQSFPYKS 772
+ K I D P++++RG+ +D GR+++ + I K +DA S+ K+N LH H+ DD+ + +
Sbjct: 323 VPKVTIRDAPRFEYRGMEIDLGRNFMPKSEILKLIDATSMYKLNKLHLHLTDDEGWRLEI 382
Query: 773 EILP 784
LP
Sbjct: 383 PGLP 386
>SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 925
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 602 TEIHDFPQYKHRGLLLD--TGRHYLSLNTIXKTLDAMSINKMNVLHWHIXDDQSF 760
++I D+P KHRG+LLD TGR + T+ +D +S K+N L ++ + +F
Sbjct: 461 SQISDWPDVKHRGILLDVSTGR-VPKMETLMSLVDILSSAKVNQLQLYMQNTFAF 514
>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 296
Score = 35.9 bits (79), Expect = 0.037
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 719 MNVLHWHIXDDQSFPYKSEILP 784
MNV HWH+ DDQ F +S++ P
Sbjct: 1 MNVFHWHLTDDQGFRIESKVYP 22
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 106 NRYEQHRRHRADHHDFYFKSAFTHANVH 23
N E H+RHR HH Y + H + H
Sbjct: 941 NYPESHKRHRHSHHHHYQHYQYNHHHDH 968
>SB_56448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +2
Query: 293 TIERYTEIWQRQYMIVKRYNNISTHVEPHDIEKYLGVLKRLTINMSAPCEYYPHFDMDES 472
TI RYTE W + ++ ST D E+ + K L ++ + P + E
Sbjct: 68 TISRYTEPWDVRTVLAYLKTIPSTADASQDPEQSMSTSKMLRVHKNVPIPSFYVMTHQEQ 127
Query: 473 YN 478
YN
Sbjct: 128 YN 129
>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
Length = 563
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 383 CRAVLHESKCCCTVLRSYIGAARFPCIVL 297
CR VL+ K CC VL + PC V+
Sbjct: 441 CRVVLYCVKLCCVVLHCVVLCCVVPCCVV 469
>SB_21748| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 373
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = +2
Query: 263 VNKKCNLLNETIERYTEIWQRQYMIVKRYNNISTHVEPHDIEKYLGVLKRLTINMSAPCE 442
V + +L E++ Y E + +++ Y + + D+ + +GV++R N +
Sbjct: 54 VRQNIGVLQESLGNYEEAMKYYQQVLQVYISTGNESKQADVRQNIGVVQRRLGNYEEAMK 113
Query: 443 YY 448
YY
Sbjct: 114 YY 115
>SB_52873| Best HMM Match : Oleosin (HMM E-Value=3)
Length = 152
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 11 TVLPMNVRVCKCRFKIKIVMVGAMATMLLVS 103
T+L + V KC + + IV V + TML+VS
Sbjct: 30 TMLSILVPYVKCEWDLSIVQVAMITTMLIVS 60
>SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)
Length = 950
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 201 CGFGQTSPRVGGNFG 157
C F QTSP GG+FG
Sbjct: 849 CAFAQTSPACGGSFG 863
>SB_25161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -1
Query: 442 FTRSRHVNCKPFQYT*ILLNVVRFYMSRNVV---VPFYDHILALPDFRVSFYR 293
F RH+ C+ Y I +R+ N+V V + +P +RVS YR
Sbjct: 122 FIEHRHIGCRYIGYRYIGYRYIRYRYIENIVISGVVISSTVYRVPLYRVSSYR 174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,225,249
Number of Sequences: 59808
Number of extensions: 537119
Number of successful extensions: 1564
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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