Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_K22
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo... 38 0.002
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 28 1.4
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 2.5
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 26 4.3
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 5.7
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce... 25 7.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.5
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 7.5
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 25 7.5
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 25 9.9
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 9.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 9.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.9
>SPCC338.10c |cox5||cytochrome c oxidase subunit
V|Schizosaccharomyces pombe|chr 3|||Manual
Length = 174
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/101 (25%), Positives = 45/101 (44%)
Frame = +2
Query: 233 IKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIY 412
I L ++K W L++EEKK Y +F + + + V W V +
Sbjct: 55 ITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQ--KTVFWGTVAGLTIGVVL 112
Query: 413 MAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 535
+ +P P +++ E Q+ + M + K+NPI G AS+
Sbjct: 113 FGLIRTQAAPSPRTMTREWQEKSNEYMKENKINPISGEASE 153
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 200 PAIRFREDTPDIKALREKEKGDWRKLTLEEK 292
P FR + + K RE++K +W+K E+K
Sbjct: 110 PPAWFRREMGEWKKAREEDKAEWKKAREEDK 140
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 218 EDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWK 361
ED + K RE++K +W+K E+K +A + E++ EW+
Sbjct: 149 EDKAEWKKAREEDKAEWKKAREEDKAEWKKAR--EEDKEWRNSMDEWR 194
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 218 EDTPDIKALREKEKGDWRKLTLEEK 292
ED + K RE++K +W+K E+K
Sbjct: 127 EDKAEWKKAREEDKAEWKKAREEDK 151
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 218 EDTPDIKALREKEKGDWRKLTLEEK 292
ED + K RE++K +W+K E+K
Sbjct: 138 EDKAEWKKAREEDKAEWKKAREEDK 162
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 586 LASAVSNLLPAVV-FIIPLGCKSIDGVHLKVQHSLELSL 473
LA V ++L V I+P G K I +HLK S+ + L
Sbjct: 213 LAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPL 251
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +2
Query: 233 IKALREKEKGDWRK---LTLEEKKTLYR 307
I+ALREK K K L LEEKKT Y+
Sbjct: 49 IEALREKAKEKKEKERILALEEKKTNYK 76
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 194 GSQACLHSWAGR*NHSLPTHGHQSWQVQCFQW 99
GSQ C +W+ N + THG QV +++
Sbjct: 335 GSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKY 366
>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 97
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 220 LTEPDGRQGEVRPVYIVGLAVETIAYPLTVTNLGKFSVSSGSS 92
+T DGR + VYI G + + P + N F V G S
Sbjct: 46 VTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFKVGPGRS 88
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 666 ITFIILHRCLFS*IHDFFXTLQP-QSVYSPVRYQIYFQ 556
+TF + F+ I+DF L+ Q ++S +RY IY++
Sbjct: 1138 LTFYF-QKSYFNAIYDFLLKLKRFQELFSSIRYAIYYK 1174
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 356 WKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLAS 532
WK + G L +S + I + VY P+ D + Q A L+R+ + + +AS
Sbjct: 79 WKQLEGETLEISRYHSQIIGQIASQVYKPLIDYYTSSPQTATLRRLAERLSTVAEEMAS 137
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 443 IPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYEN 550
+P + ERQ ++ +L+ +P+DG ++ DY N
Sbjct: 27 LPKIVLSERQFCDVELILNGGFSPLDGFMNQKDYLN 62
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 221 DTPDIKALREKEKGDWRKLTLEEKKTLYRA 310
D P I + R+ E RKL+ +EKKTL +A
Sbjct: 194 DNPTIHS-RQLESMAGRKLSTDEKKTLKKA 222
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -2
Query: 643 MFILINTRFLL--YTTTPKCLLASAVSNL 563
+ IL+ T F++ ++T P C+LAS V +L
Sbjct: 412 VLILLATFFIMPVFSTVPTCMLASMVVSL 440
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 271 APITLFFFTESLNVRGVLTEPDGRQGEVRPVYIVGLAVETIAYPLTVTN 125
+P+ FF+ S + P E P ++G AV T A+P + N
Sbjct: 433 SPLETFFWCCSFPSTASTSSPFSYYPESLPTPLLGRAVNTTAFPTSRQN 481
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 281 GSICANHP-FLFHGEP*CQGCPHGTGWQAGGSQACL 177
G C+ P ++ E QGCP G+ AGG+ C+
Sbjct: 285 GDTCSGLPCYVDPRENGVQGCPEGSPIGAGGACFCV 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,297
Number of Sequences: 5004
Number of extensions: 66744
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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