Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_K13
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha... 69 4e-13
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 33 0.040
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 32 0.069
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 3.4
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 3.4
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 3.4
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 26 4.5
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 4.5
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 25 7.9
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 7.9
>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
Tim9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 84
Score = 69.3 bits (162), Expect = 4e-13
Identities = 27/66 (40%), Positives = 45/66 (68%)
Frame = +1
Query: 169 MSEVDQIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVS 348
+++V + K K++L Y+ L++ CF+DC+ DFTS L + E +C C +K+L+ ++RV
Sbjct: 12 LTQVLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVG 71
Query: 349 QRFHEF 366
QRF EF
Sbjct: 72 QRFAEF 77
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 32.7 bits (71), Expect = 0.040
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 220 NKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 357
+K++E CF+ CI + S T E C CME+Y+ VS+ +
Sbjct: 39 SKINENCFDKCIPEPGS-TFDPNEKSCVSKCMERYMDAWNIVSRTY 83
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 31.9 bits (69), Expect = 0.069
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +1
Query: 220 NKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 357
++ + C+ CI + ++ KS E++C NC+E++L N + +R+
Sbjct: 38 HQFTSTCWPKCIGNIGNKLDKS-EEQCLQNCVERFLDCNFHIIKRY 82
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 142 IQKWRPLXMMSEVDQIKTFKDFLVQYNKLSELCFNDCIHD 261
+QK R + ++ + +++F F Q K ++L +D +H+
Sbjct: 77 LQKERKVLVLIHCESLQSFDSFFAQKLKYADLISSDNVHE 116
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 205 FLVQYNKLSELCFNDCIHDFTSRTL 279
F V Y LS+ N C HDFT + L
Sbjct: 81 FTVFYQILSQFMQNICFHDFTIQDL 105
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.2 bits (55), Expect = 3.4
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 361 EFQMLANENMLALAQKSGNPS*KVWYICDLSSHFL*GVVRESTPYIMIYLCKCTV 525
EF LA+ + L Q +P+ +Y S FL YI+I LCKC +
Sbjct: 687 EFYDLASREITLLQQSDNHPNIVRYYCKQKSDQFL---------YIVIELCKCNL 732
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 220 NKLSELCFNDCIHDFTSRTLKSTEDKCTV 306
NK++ LCF D I D + ++K T KC +
Sbjct: 81 NKIASLCFEDVI-DTSHVSIKLTLPKCVL 108
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 334 NQRVSQRFHEFQMLANENMLALAQ 405
N RVS+R HEFQ + + +L Q
Sbjct: 189 NLRVSKRVHEFQEFFGDGITSLTQ 212
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 555 QNFIDNNLDIHCTFAQVYHYIG 490
Q F+++ +CTF Q+Y+ IG
Sbjct: 191 QEFVESCHGQYCTFQQIYNNIG 212
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 196 FKDFLVQYNKLSELCFNDCI 255
FK+F+ + S++ FNDC+
Sbjct: 260 FKEFMPWFEAPSDIVFNDCL 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,444
Number of Sequences: 5004
Number of extensions: 40768
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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