Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_K12
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D57924 Cluster: PREDICTED: similar to CG31794-PC...    38   0.20 
UniRef50_Q89745 Cluster: Protein Tat; n=171; Primate lentivirus ...    37   0.60 
UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit ...    35   2.4  
UniRef50_P16786 Cluster: Uncharacterized protein UL49; n=7; Cyto...    34   3.2  
UniRef50_UPI000069E94D Cluster: TATA-binding protein associated ...    34   4.2  
UniRef50_UPI0000D567EB Cluster: PREDICTED: similar to salvador h...    33   5.6  
UniRef50_Q91TN9 Cluster: T49; n=1; Tupaiid herpesvirus 1|Rep: T4...    33   5.6  
UniRef50_Q0ABR6 Cluster: Methyltransferase small; n=23; Gammapro...    33   5.6  
UniRef50_Q00023 Cluster: Cellulose-growth-specific protein precu...    33   5.6  
UniRef50_UPI00015B6127 Cluster: PREDICTED: hypothetical protein;...    33   9.7  
UniRef50_Q80Z21 Cluster: Secreted gel-forming mucin; n=9; Tetrap...    33   9.7  
UniRef50_A0YMU1 Cluster: Penicillin-binding protein 1A; n=2; Osc...    33   9.7  
UniRef50_Q54L02 Cluster: LIM domain-containing protein; n=1; Dic...    33   9.7  
UniRef50_Q4H3V4 Cluster: Transcription factor protein; n=1; Cion...    33   9.7  
UniRef50_Q55P80 Cluster: Putative uncharacterized protein; n=2; ...    33   9.7  
UniRef50_P84870 Cluster: Lectin-1 (HCA) [Contains: Lectin-1 N-te...    33   9.7  

>UniRef50_UPI0000D57924 Cluster: PREDICTED: similar to CG31794-PC,
           isoform C; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG31794-PC, isoform C - Tribolium castaneum
          Length = 504

 Score = 38.3 bits (85), Expect = 0.20
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
 Frame = +2

Query: 458 QSNYSAHTPGYNVGQSPGYG-RTGGRGNXXXXXXXXXXXXXARYGNYAEKTSFTERSVND 634
           Q    A TPGY  G  PG G +     N             +RYGN +E  +    ++N 
Sbjct: 60  QPTSGARTPGYGYGSGPGAGEKRTFNNNLSELDTLLQDLSNSRYGNISE--NGMNGTLNG 117

Query: 635 SYGRSNGAISPASA---------RPTVDSLLDQLS 712
           S    +G +SP S          R TVDSLL++L+
Sbjct: 118 STYNGSGGLSPHSRPSSAQSTLNRRTVDSLLEELN 152


>UniRef50_Q89745 Cluster: Protein Tat; n=171; Primate lentivirus
           group|Rep: Protein Tat - Human immunodeficiency virus
           type 2 (isolate EHO subtype B) (HIV-2)
          Length = 138

 Score = 36.7 bits (81), Expect = 0.60
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -1

Query: 593 NSRSGHCSSRRVGCPARSSSLDHRSCRSLAIVPRCNQACGHCSCFGRYSYICAESSSLNG 414
           NS SGH SS   G  A +  LD+R    L+ + R  +AC +     + SY C       G
Sbjct: 13  NSSSGHSSSTSEGV-ANTQGLDNRGEEILSQLYRPLKACSNTCYCKKCSYHCQLCFLKKG 71

Query: 413 MSLCFGKSAK 384
           + +C+ +S K
Sbjct: 72  LGICYERSRK 81


>UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit RPB1;
            n=473; cellular organisms|Rep: DNA-directed RNA
            polymerase II subunit RPB1 - Homo sapiens (Human)
          Length = 1970

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +2

Query: 380  PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRT 523
            P SPTY  TS  +S     +  TS   S YS  +PGY+   SP Y  T
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYS-PTSPTYSLT 1957


>UniRef50_P16786 Cluster: Uncharacterized protein UL49; n=7;
           Cytomegalovirus|Rep: Uncharacterized protein UL49 -
           Human cytomegalovirus (strain AD169) (HHV-5) (Human
           herpesvirus 5)
          Length = 570

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 24/77 (31%), Positives = 30/77 (38%)
 Frame = -1

Query: 599 LRNSRSGHCSSRRVGCPARSSSLDHRSCRSLAIVPRCNQACGHCSCFGRYSYICAESSSL 420
           LR    G      + C  R     H   RSL  V  C Q CGHC   G+    C ++  L
Sbjct: 339 LRGGLIGSVIDLPLWCLCRLKCERHLDARSLVAVV-CRQ-CGHCLNLGKEKLHCQQNFPL 396

Query: 419 NGMSLCFGKSAKLVLHN 369
           N M     +  K V+ N
Sbjct: 397 NSMFYYRDRQEKSVIFN 413


>UniRef50_UPI000069E94D Cluster: TATA-binding protein associated
           factor 2N (RNA-binding protein 56) (TAFII68)
           (TAF(II)68).; n=3; Xenopus tropicalis|Rep: TATA-binding
           protein associated factor 2N (RNA-binding protein 56)
           (TAFII68) (TAF(II)68). - Xenopus tropicalis
          Length = 521

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +2

Query: 500 QSPGYG-RTGGRGNXXXXXXXXXXXXXARYGNYAEKTSFTERSVNDSYGRSNGAISPASA 676
           +S G G RTGGRG+             + YG  AE++S+     +  YG+ + A+  A  
Sbjct: 11  RSLGLGSRTGGRGDAGAGKPNFTFQIYSGYGQTAEQSSY--GGYSSGYGQGHSAMYMAKI 68

Query: 677 RPTVDSLLDQLSAEIPNGRQS 739
            P +  L   L  +   G  +
Sbjct: 69  VPLIPGLAQPLQGQSSTGHDN 89


>UniRef50_UPI0000D567EB Cluster: PREDICTED: similar to salvador
           homolog 1; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to salvador homolog 1 - Tribolium castaneum
          Length = 404

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 365 SDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQS 505
           ++Y   +SP YQNT   H  + T   Y++T    YS    G   G+S
Sbjct: 155 NNYNSRSSPIYQNTDGAHKSQDTTPIYSNTGAERYSNPLQGMTYGES 201


>UniRef50_Q91TN9 Cluster: T49; n=1; Tupaiid herpesvirus 1|Rep: T49 -
           Tupaiid herpesvirus 1 (strain 1) (TuHV-1) (Herpesvirus
           tupaia (strain1))
          Length = 588

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = -1

Query: 599 LRNSRSGHCSSRRVGCPARSSSLDHRSCRSLAIVPRCNQACGHCSCFGRYSYICAESSSL 420
           LR+   G      V C  ++    +R    L  V   N  CGHC   G+   +CA++  L
Sbjct: 369 LRHGLIGSVIELPVACHCKTKCERYRGAADLVAVVCRN--CGHCLNLGKEKLLCAQTFPL 426

Query: 419 NGMSLCFGKSAKLVLHN 369
           N +     +  K V+++
Sbjct: 427 NSLFYYRDRQEKSVIYS 443


>UniRef50_Q0ABR6 Cluster: Methyltransferase small; n=23;
           Gammaproteobacteria|Rep: Methyltransferase small -
           Alkalilimnicola ehrlichei (strain MLHE-1)
          Length = 403

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -2

Query: 589 PVAGTAQVVE*GVQLAQVPSTTGPAVAWRLSHVVTRR 479
           P A T +VVE GV+  QVP+TTG    W   H + R+
Sbjct: 180 PEAQTLEVVENGVRF-QVPATTGQKTGWYYDHRMNRQ 215


>UniRef50_Q00023 Cluster: Cellulose-growth-specific protein
           precursor; n=1; Agaricus bisporus|Rep:
           Cellulose-growth-specific protein precursor - Agaricus
           bisporus (Common mushroom)
          Length = 320

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +2

Query: 371 YAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGY--NVGQSPGYGRTGGRG 535
           Y  P  P Y +  +  S   TPH  T    S     TPG     GQ  G G TGG G
Sbjct: 246 YIVPGPPLYGSGGNGGSPTTTPHTTTPITTSPPPTSTPGTIPQYGQCGGIGWTGGTG 302


>UniRef50_UPI00015B6127 Cluster: PREDICTED: hypothetical protein; n=1;
            Nasonia vitripennis|Rep: PREDICTED: hypothetical protein
            - Nasonia vitripennis
          Length = 2027

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 374  AKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQS 505
            +K AS T  +TSS+     + + Y+S+V SNY A  P Y  G S
Sbjct: 910  SKLASFTSPSTSSYEGPSSSSNSYSSSVSSNY-ASVPNYPSGNS 952


>UniRef50_Q80Z21 Cluster: Secreted gel-forming mucin; n=9;
            Tetrapoda|Rep: Secreted gel-forming mucin - Mus musculus
            (Mouse)
          Length = 1726

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 401  NTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQS 505
            NT+S      T H Y+STV S  S HTPG +   S
Sbjct: 1506 NTTSSVPVTSTEHPYSSTVTSGSSTHTPGLSPSSS 1540


>UniRef50_A0YMU1 Cluster: Penicillin-binding protein 1A; n=2;
           Oscillatoriales|Rep: Penicillin-binding protein 1A -
           Lyngbya sp. PCC 8106
          Length = 855

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +2

Query: 374 AKPASPTYQNTSSFHSEKMTP--HKYTS-TVQSNYSAHTPGYNVGQSPGYGRTGG 529
           AKP  P    T S   +K  P  H++ S T ++NY++ +  YN G S GYG +GG
Sbjct: 766 AKPHQPNSIVTGSSAVQKDDPDYHRFFSNTNKTNYNSRS--YNDGYSGGYGYSGG 818


>UniRef50_Q54L02 Cluster: LIM domain-containing protein; n=1;
           Dictyostelium discoideum AX4|Rep: LIM domain-containing
           protein - Dictyostelium discoideum AX4
          Length = 874

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +2

Query: 587 GNYAEKTSFTERSVNDSYGRSNGAISPASARPTVDSLLDQL 709
           GN+  K+   ++ + DS  +S+ +ISP+S RPT D + +Q+
Sbjct: 166 GNFVNKSQQQQQPI-DSCSKSSISISPSSPRPTEDDIKEQV 205


>UniRef50_Q4H3V4 Cluster: Transcription factor protein; n=1; Ciona
           intestinalis|Rep: Transcription factor protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 656

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 344 NGSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQ 460
           +G  +++   AKP SP+  +T+S+ SE   PH   +TVQ
Sbjct: 577 DGEDSVADMCAKPCSPSGCSTNSYTSELTEPHPEVTTVQ 615


>UniRef50_Q55P80 Cluster: Putative uncharacterized protein; n=2;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 603

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +2

Query: 350 SRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTS-----TVQSNYSAHTPGYNVGQSPGY 514
           +R+  S  + PA+P    TSS + ++ TP  Y++     T  SN    + G  VG   G 
Sbjct: 11  NRSTPSTLSTPATPVQSTTSSNNGDRSTPLTYSNGNANRTPSSNTRWSSNGSGVGHGSGI 70

Query: 515 GRTGG 529
           G   G
Sbjct: 71  GHKNG 75


>UniRef50_P84870 Cluster: Lectin-1 (HCA) [Contains: Lectin-1
           N-terminal subunit; Lectin-1 C- terminal subunit]; n=2;
           Hypnea|Rep: Lectin-1 (HCA) [Contains: Lectin-1
           N-terminal subunit; Lectin-1 C- terminal subunit] -
           Hypnea cervicornis (Brazilian red alga)
          Length = 90

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -1

Query: 290 DGPVKCPCLEEIQF---CPVSWCDHRATWSCRWGC 195
           D P  CPC  E QF   C   W    AT +C  GC
Sbjct: 41  DNPYPCPCTTEAQFPVCCTTQWGLVSATGNCACGC 75


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,713,308
Number of Sequences: 1657284
Number of extensions: 13117638
Number of successful extensions: 40477
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 38333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40389
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)