Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_K12
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 30 0.40
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 29 0.70
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.2
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 27 3.7
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.9
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 4.9
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 8.6
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 25 8.6
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 8.6
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 29.9 bits (64), Expect = 0.40
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 428 MTPHKYTSTVQSNYSAHT--PGYNVGQSPGYGRTGGRGNXXXXXXXXXXXXXARYGNYAE 601
++PH Y +SN + T P Y+VG + + N YGNY
Sbjct: 11 VSPHMYMLPEESNSNTATNAPSYSVGGTTANSYSSNSYNDNNNSNSTYGSSN-NYGNYGS 69
Query: 602 KTSFTERSVNDSYGRSNGA 658
++ +++YG SNG+
Sbjct: 70 SNNYGSYGASNTYG-SNGS 87
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 29.1 bits (62), Expect = 0.70
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 380 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTP 484
PA+P+ QN+ S H +M PH Q SA TP
Sbjct: 460 PAAPSIQNSLSVHESEMPPHVTRDYTQPAASA-TP 493
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 380 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGY 514
P+ + Q T+ F+S +PH +NYSA TP +N + G+
Sbjct: 230 PSLQSIQQTNGFYSGHNSPH-------TNYSASTPSFNHFNAAGH 267
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 380 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRT 523
P+SP+Y TS +S T Y+ T S YS +P Y+ SP Y T
Sbjct: 1573 PSSPSYSPTSPSYSP--TSPSYSPTSPS-YSPTSPSYS-ATSPSYSPT 1616
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 59 LCNCAICYLC*CSEKLNLKSEENM 130
LC C++CYLC ++ LN S +++
Sbjct: 464 LC-CSLCYLCLYAQNLNSHSSQSL 486
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 421 REDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRR 567
RE A +E +L+C HA + +++L Q+ W AGH RR
Sbjct: 1316 REAAGAGNFEITMGKLRCLHALGEWDRLSQLAQENWI----HAGHDARR 1360
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 4.9
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 453 PSKATTVPTRLVTTWDNRQATAGPVVEGT*ASWTPYSTT*AVPATGITQ---KKLRSPKD 623
P +A T+P L+ + Q T+ ++EG + +S T +P T Q KK S D
Sbjct: 92 PVQAQTLPDPLLFDIPDHQETSYSLLEGYSVTAHDHSDTSPLPITSSNQKEGKKNVSSID 151
Query: 624 L*MTATGAVTEP-SVRHQR 677
+ M + + +P S++H++
Sbjct: 152 VSMVSDSSEFKPDSLQHEK 170
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 599 LRNSRSGHCSSRRVGC 552
++N +SG+C R VGC
Sbjct: 669 IKNEKSGYCIIRNVGC 684
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 599 EKTSFTERSVNDSYGRSNGAISPASARP 682
EKT E+ D +GR NG I ++ P
Sbjct: 232 EKTDVEEKKDPDKHGRENGNIDDLTSLP 259
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = +1
Query: 136 PRCFACRSPELYXXXXXXXXXXXXXDHVARWS 231
P C C+SP L+ D +A WS
Sbjct: 333 PLCPLCKSPRLFEMQLMPHAISILNDEIAEWS 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,344
Number of Sequences: 5004
Number of extensions: 51874
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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