Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_K12
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    31   1.3  
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605...    29   3.9  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   5.1  
10_08_0243 - 16124790-16125361,16126358-16126547                       28   6.8  
06_03_1506 + 30641428-30642168                                         28   6.8  
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213     28   6.8  
02_02_0707 + 13144147-13144788,13145115-13148663                       28   9.0  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 29/98 (29%), Positives = 38/98 (38%)
 Frame = +2

Query: 380  PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTGGRGNXXXXXXX 559
            P SP+Y  TSS +S        TS     YS  +PGY+   SP Y  +    N       
Sbjct: 1768 PTSPSYSPTSSAYSP-------TSPA---YSPTSPGYS-PTSPSYSPSSPSYNPSSVKYT 1816

Query: 560  XXXXXXARYGNYAEKTSFTERSVNDSYGRSNGAISPAS 673
                      NY   TS T    + SY + + + SP S
Sbjct: 1817 PSHAYSPSSPNYYSSTSPTYSPTSPSYSQPSPSYSPTS 1854



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +2

Query: 362  SSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGY 514
            +S    P SP Y  TSS +S     +  TS   S YS  +P Y+   SP Y
Sbjct: 1672 TSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYS-YSPTSPSYS-PTSPSY 1720


>08_02_1340 -
           26256768-26256999,26258105-26258774,26259273-26260555,
           26262403-26263499
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 563 RVGC-PARSSSLDHRSCRSLAIVPRCNQACGHCSC 462
           R GC P+R+   D   C ++AI     + CGH SC
Sbjct: 423 RGGCVPSRNPLKDPGDCEAVAIRDTDGEDCGHFSC 457


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 381 QLRRLTKTQAHSIQRR*LRTNIRVPSKATTVPTRLVTTWDNRQATAGP 524
           +LR L K +AH + +R LR ++ VP K ++       +W  +   A P
Sbjct: 118 RLREL-KDRAHDVGQRRLRYDVEVPGKPSSKAAGGAASWSVQSEEASP 164


>10_08_0243 - 16124790-16125361,16126358-16126547
          Length = 253

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 464 NYSAHTPGYNVGQSPGYGRTGGRGN 538
           NY AH  G   G+  GY + GG G+
Sbjct: 125 NYGAHASGGGGGEGGGYSQYGGSGS 149


>06_03_1506 + 30641428-30642168
          Length = 246

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 464 NYSAHTPGYNVGQSPGYGRTGGRGN 538
           +Y+  T GY  G   GYG  GG G+
Sbjct: 222 SYNGGTGGYGEGHGSGYGGGGGHGH 246


>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
          Length = 491

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 224 RATWSCRWGC 195
           R  WSCRWGC
Sbjct: 457 RCAWSCRWGC 466


>02_02_0707 + 13144147-13144788,13145115-13148663
          Length = 1396

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +1

Query: 523  RWSRELERAGHPTRRLEQCPLRELRRKNFVHRKICK*QLRAQ*RSHQSGISEAHRRLLAG 702
            RWSRE++ AG    R+ +       R     RK+C  Q R + R+H   +   HR L+  
Sbjct: 1168 RWSREVKEAGGEADRILEGIAEMWLRLVQALRKVCTDQ-REEVRNH--ALLSLHRCLVVD 1224

Query: 703  SIKRGNT*W 729
             I   ++ W
Sbjct: 1225 GISVPSSAW 1233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,571,935
Number of Sequences: 37544
Number of extensions: 375473
Number of successful extensions: 1163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)