Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_K12
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 33 0.21
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 33 0.21
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 31 0.86
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 31 0.86
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 30 2.0
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 2.6
U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical p... 28 6.0
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p... 28 6.0
Z81553-3|CAB04493.1| 136|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical p... 28 8.0
Z68303-8|CAA92640.2| 273|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +2
Query: 347 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTG 526
G + SS P+SPTY TS +S T +Y+ T YS +P Y SP Y T
Sbjct: 1714 GGYSPSSPKYSPSSPTYSPTSPSYSP--TSPQYSPT-SPQYSPSSPTY-TPSSPTYNPTS 1769
Query: 527 GRG 535
RG
Sbjct: 1770 PRG 1772
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 353 RNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSP 508
R SS P SPTY TS ++ + TS + + PG + SP
Sbjct: 1771 RGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSP 1822
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +2
Query: 347 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTG 526
G + SS P+SPTY TS +S T +Y+ T YS +P Y SP Y T
Sbjct: 1721 GGYSPSSPKYSPSSPTYSPTSPSYSP--TSPQYSPT-SPQYSPSSPTY-TPSSPTYNPTS 1776
Query: 527 GRG 535
RG
Sbjct: 1777 PRG 1779
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 353 RNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSP 508
R SS P SPTY TS ++ + TS + + PG + SP
Sbjct: 1778 RGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSP 1829
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical protein
K08E4.1 protein.
Length = 1208
Score = 31.1 bits (67), Expect = 0.86
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Frame = +2
Query: 347 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGY---G 517
GS SS Y+ +P + + TP T Y + TP Y+ G++P Y G
Sbjct: 787 GSGGGSSFYSSSKTPMRDSGKTPMYGSKTPMYGAQTPM--YGSMTPAYDGGRTPAYGEGG 844
Query: 518 RTGGRGNXXXXXXXXXXXXXARYGNYAEKTSFTERSVNDSYGRSNGAISPA 670
RT G+ +R Y +S T +YG ++GA +PA
Sbjct: 845 RTPAYGSKTPAYGDLDEHSSSRTPAYGNDSSRT-----PAYGSADGARTPA 890
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical protein
K08E4.1 protein.
Length = 1208
Score = 31.1 bits (67), Expect = 0.86
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Frame = +2
Query: 347 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGY---G 517
GS SS Y+ +P + + TP T Y + TP Y+ G++P Y G
Sbjct: 787 GSGGGSSFYSSSKTPMRDSGKTPMYGSKTPMYGAQTPM--YGSMTPAYDGGRTPAYGEGG 844
Query: 518 RTGGRGNXXXXXXXXXXXXXARYGNYAEKTSFTERSVNDSYGRSNGAISPA 670
RT G+ +R Y +S T +YG ++GA +PA
Sbjct: 845 RTPAYGSKTPAYGDLDEHSSSRTPAYGNDSSRT-----PAYGSADGARTPA 890
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 359 ISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNY--SAHTPGYNVGQSP 508
+ + Y PA+ T N+S + + +P Y + QS+Y SA P ++ +P
Sbjct: 391 VPTSYYPPAASTASNSSGYQAPYYSPPSYPTQQQSSYVPSAVPPMFSATSAP 442
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/86 (30%), Positives = 32/86 (37%)
Frame = +3
Query: 438 TNIRVPSKATTVPTRLVTTWDNRQATAGPVVEGT*ASWTPYSTT*AVPATGITQKKLRSP 617
T + VPS TVPT +VT VV T ST P TG +
Sbjct: 376 TVVTVPSTVVTVPTTVVTNPSTVVTAPSTVVTVPTTVMTSRSTVITTPTTGGSSPSTAGT 435
Query: 618 KDL*MTATGAVTEPSVRHQRGPPSTP 695
+ +T TE S+ G STP
Sbjct: 436 S---LASTAVTTETSI----GSSSTP 454
>U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical
protein F19F10.11b protein.
Length = 868
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = -3
Query: 309 RLPDELR-RPGEVPLPRGDPVLPG 241
+LP+E++ +PGE+ L DP+LPG
Sbjct: 31 QLPEEIKLKPGEMILVPDDPMLPG 54
>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
protein F19F10.11a protein.
Length = 1121
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = -3
Query: 309 RLPDELR-RPGEVPLPRGDPVLPG 241
+LP+E++ +PGE+ L DP+LPG
Sbjct: 31 QLPEEIKLKPGEMILVPDDPMLPG 54
>Z81553-3|CAB04493.1| 136|Caenorhabditis elegans Hypothetical
protein F56H6.3 protein.
Length = 136
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +2
Query: 341 INGSRNISSDYAKPASPTYQNTSSFHSEKMTPH--------KYTSTVQSNYSAHTPGYN 493
+ GS +++ PAS S HS +M ++ +T +Y AHTP Y+
Sbjct: 63 LTGSHEVAAKAPPPASAVAAPASRRHSRRMYSEVRNRERVGRFRTTTSPHYVAHTPSYS 121
>Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical
protein C55A6.1 protein.
Length = 228
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1
Query: 518 CRSLAIVPRCNQACGHCSCFGRYSYICAESSSLNGMSLC 402
C+ IVP ACGH CF IC + +N M C
Sbjct: 15 CQCKMIVPTTIPACGHKFCF-----ICLKGVYMNDMGGC 48
>Z68303-8|CAA92640.2| 273|Caenorhabditis elegans Hypothetical
protein ZK809.7 protein.
Length = 273
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 542 SSSLDHRSCRSLAIVPRCNQACGHCSCF 459
SS ++ C +++P Q CGH +C+
Sbjct: 211 SSDIECVVCDKPSVIPMVGQKCGHVACY 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,305,417
Number of Sequences: 27780
Number of extensions: 310320
Number of successful extensions: 1057
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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