Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_K10
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    37   0.004
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   3.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.2  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   9.2  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   9.2  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 18/83 (21%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = +3

Query: 507 LQEINRALQSNTYLTGQF-LTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQP 683
           +++++  L+S+T++     +++AD+A+Y  ++  +  +S  E     ++CRW   IQ Q 
Sbjct: 125 VEQLDEFLKSSTFIAQDSGISVADLAVYARIHSYICGLSAKEGYKLNNVCRWFDFIQHQE 184

Query: 684 RVCHNRPPLPLNAVSLSVLAPAV 752
            V      + +   ++ + AP +
Sbjct: 185 SVMEAANSMSMKLANIDLNAPKI 207


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 627  LLQTYAPVKDTLCNIMQHQQLLETGQSDMCYFVELCLFLAR 505
            LLQ Y  +K  + N+ + QQLL T  S++   V+    L++
Sbjct: 963  LLQRYWDLKREIINLQKRQQLLLTTNSNLMSSVDTLSILSK 1003


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 282 LDVSVGAVCYNTDKVPTAVLENKNVEGFVTIILSMASKCGTASSEEQ 422
           + V  G V   T K+P + L+NK VE ++  I ++AS      S+ +
Sbjct: 54  ISVQYGLVEELTLKIPWSSLKNKPVEIYIVGIRALASMEENVKSQSE 100


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 137  VVLEIVYSSKLQK*LSYYFALTHSLEPDYFYAENEYQ*CGCN 262
            VV   + +S     +S YF +T  L PD  Y  N    C CN
Sbjct: 996  VVHRHIVNSVCDNAVSQYFLVTPKLLPDLTYHRNLKVLCICN 1037


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 462 FSNQAVANSTFAFKFL-QEINRALQSNTYLTGQFLTIADVAL-YYIVYPLLEHMSVAERD 635
           +  QA   +  A   +    +  L S TYL G  LT+AD+    ++ +     ++ +   
Sbjct: 121 YDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLA 180

Query: 636 AFVHLCRWSKHIQAQPRVCHNRPPL 710
            + H+ R+ + I  Q ++     PL
Sbjct: 181 KYTHIYRYYQTIYHQAKLDAITEPL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,942
Number of Sequences: 5004
Number of extensions: 64097
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)