Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_K10
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 36 0.036
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205 36 0.036
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.047
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 33 0.19
01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294 33 0.25
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 33 0.33
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 31 0.77
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 30 2.4
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 30 2.4
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 29 3.1
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 28 9.5
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 35.9 bits (79), Expect = 0.036
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 501 KFLQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQ 680
K L+ L + YL G F+++AD++ + VY LL + +A+ + W + +
Sbjct: 142 KALEVYEAQLSKSKYLAGDFISLADISHFPTVYYLLASAHASVLEAYPRVKAWIDDVMQR 201
Query: 681 PRV 689
P V
Sbjct: 202 PSV 204
>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
Length = 220
Score = 35.9 bits (79), Expect = 0.036
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 465 SNQAVANSTFAFKFLQEINRA-LQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAF 641
+ + V NS K + E+ A L NTYL G FL+ D++ + + + + D +
Sbjct: 132 NQKVVDNSLEKLKKVLEVYEARLSQNTYLAGNFLSFVDLSHFPFTFYFMATPYASLLDKY 191
Query: 642 VHLCRWSKHIQAQPRV 689
H+ W + A+P +
Sbjct: 192 PHVKAWWDGLAARPSI 207
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 35.5 bits (78), Expect = 0.047
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Frame = +3
Query: 300 AVCYNTDKVPTAVLENKNVEGFVTIILSMASKCGTASSEEQRLLTYQWLEYISMFSNQAV 479
A+C + P + E + + S K SSE++ L +W+E+ S F V
Sbjct: 18 ALCKHLSLDPNTISSTSIEESDIATLFSHIVK----SSEDEVL---KWVEFSSNF----V 66
Query: 480 ANSTFAFKFLQEINRALQSNTYLTGQFL--TIADVALYYIVYPLLEHMSVAERDAFVHLC 653
L +N+ L + L G ++AD+ ++ + + H+ E + H+
Sbjct: 67 GKCGEQHALLGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVL 126
Query: 654 RWSKHIQ 674
RW +IQ
Sbjct: 127 RWMDYIQ 133
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +3
Query: 501 KFLQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQ 680
K L+ L +TYL G F++ AD+ + + + + D++ H+ W + + A+
Sbjct: 145 KVLEVYEARLSQSTYLAGDFVSFADLNHFPYTFYFMGTPYASLFDSYPHVKAWWERLMAR 204
Query: 681 PRV 689
P V
Sbjct: 205 PSV 207
>01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294
Length = 199
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 543 YLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQPRV 689
YL G F+++AD++ + + + LL + DA+ H+ W + +P V
Sbjct: 142 YLAGDFISLADLSHFPMTHYLLATPHASVLDAYPHVKSWINDLMKRPAV 190
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +3
Query: 501 KFLQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQ 680
K L+ L + YL G FL+ AD+ + + + + DA+ H+ W + + ++
Sbjct: 145 KVLETYEARLSGSRYLAGDFLSFADLNHFPFTFYFMATPCASLFDAYPHVKAWWEGLMSR 204
Query: 681 PRV 689
P +
Sbjct: 205 PSI 207
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 501 KFLQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQ 680
K Q L YL G FL++AD++ + Y LL A D F + W + A+
Sbjct: 141 KTFQVYEERLCKFRYLAGDFLSLADLSHFPTAYYLLATPHAAMLDEFPLVKAWIDGMLAR 200
Query: 681 PRV 689
P V
Sbjct: 201 PSV 203
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 438 QWLEYISMFSNQAVANSTFAFKFLQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEHM 617
+WLEY F + +F ++ L S T+L G LTIAD+ ++ + + +
Sbjct: 79 EWLEYAPTFLLGSEFEVACSF-----VDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRW 133
Query: 618 -SVAERDAFVHLCRWSKHIQA 677
S+ + + +L RW I +
Sbjct: 134 ESLRKSKKYQNLVRWFNGIDS 154
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 507 LQEINRALQSNTYLTGQFLTIADVALYYIVY-PLLEHMSVAERDAFVHLCRWSKHIQAQP 683
L +N L SNTYL G +T+AD+ + +Y M+ + F H+ R+ + QP
Sbjct: 147 LGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQP 206
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 507 LQEINRALQSNTYLTGQFLTIADVALYYIVY 599
L +N L SNTYL G +T+AD+ + +Y
Sbjct: 708 LGALNTHLASNTYLVGHSVTLADIVMTCNLY 738
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 507 LQEINRALQSNTYLTGQFLTIADVALYYIVY 599
L +N L SNTYL G +T+AD+ + +Y
Sbjct: 162 LGALNTHLASNTYLVGHSVTLADIVMTCNLY 192
>10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 216 QIIFMPKMSINNVDVIKMIGKYLDVSVGAVCYNTDKVPTAVL 341
++ F+P I +K +G Y+D ++ + C +VPT V+
Sbjct: 912 EVCFVPDADIMLAVTLKYLGVYIDKTMFSQCILVVQVPTEVI 953
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,446,647
Number of Sequences: 37544
Number of extensions: 381739
Number of successful extensions: 899
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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