Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_K09
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)                    31   1.5  
SB_15290| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.4  
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)                   29   5.9  
SB_52524| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)                   29   5.9  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   29   5.9  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    28   7.8  

>SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)
          Length = 585

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 621 YSTRRSTHTYYHSTRLHCDGLRRRTPPCVLARRYR-HQPASLSLAFGLPVYGQR 779
           YS++R  H      R H  G  ++   C++  R + H+PAS+    G   +G+R
Sbjct: 4   YSSKRMVHRTVTFFRDHLQGAAKKELTCIVFNRDKIHRPASVFDRVGFESFGRR 57


>SB_15290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
 Frame = +1

Query: 211 LTEDYANNGIELNNRFGDDASEKIPLKNLSKLPEFKIATQLPKDAE-FSLFLPKHQEMAN 387
           + +D  +  I+L+ +FGD  S++  L     LPE K+   + K +E +   +    E   
Sbjct: 1   MDDDEPDLDIKLD-QFGDSTSQQRELSPTIFLPESKVPANIKKSSETWEDGISFDNEGIT 59

Query: 388 ELLGVLMDVPE----NELQDLLS 444
           + LG L+D  E    NE+++LL+
Sbjct: 60  DNLGKLLDAAEHGRVNEVKELLA 82


>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 536 SELRILQKYFPLNSWIPKYSLK 601
           S L  L+K FP+  W+PKY+ +
Sbjct: 64  SPLETLEKLFPIVQWLPKYNFR 85


>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 391 LLGVLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKV 537
           LL +L  +PEN+          + V  NP+L  Y  +V L  ++  RK+
Sbjct: 384 LLAMLRTLPENQKSKCADMGRSSEVESNPKLPKYKATVRLQEQQSRRKI 432


>SB_52524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +1

Query: 367 KHQEMANELLGVLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRK--VR 540
           KH  + N +L  L+D   + LQD  S    A   +N  + N+   +   HR   R+  VR
Sbjct: 318 KHDGLENRILTPLLDKLYSHLQDGWSQVPDALTLVNYLVHNFKQGLQKRHRVSERRPTVR 377

Query: 541 VKNFAEVFPSKFLDS 585
           +K++ +  P K + S
Sbjct: 378 LKDYVK-RPGKTISS 391


>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
          Length = 558

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 290 RTSANFQNLKLQLNYPRTLNSHYFYLNIKKWQMNFLAFSWMYQRTNYK 433
           R SAN+   +   + PR L S     + KKWQ   +   W  Q  + K
Sbjct: 347 RHSANYNLRQADFSLPRELGSGKAKKDAKKWQRRAIKHDWRKQCEHLK 394


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 184 SVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNL-SKLPEFKIATQLPKDAEFSLF 360
           S +Q+T QF++ +Y N    L   FGDD  +   +++L +   E  +   +    E+  F
Sbjct: 126 SAYQITVQFISSNYGNFNQRLVFDFGDDDGKAKIVRHLGASRAEHPLPPNMKSTIEYGAF 185


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 139 DRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSKLPEFK 318
           D+P+  +  P+G    +     QF T DY    +  + +  D ++  IPL   ++  E K
Sbjct: 298 DKPSTVVPLPQGAEVKLQDKRRQFETLDYKAQRLHSSGKSFDSSANSIPLSTSTRRAESK 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,300,367
Number of Sequences: 59808
Number of extensions: 492828
Number of successful extensions: 1200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)