Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_K06
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50675| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7) 30 2.4
SB_19945| Best HMM Match : TAFH (HMM E-Value=2.8) 29 3.2
SB_48887| Best HMM Match : PA28_alpha (HMM E-Value=6.2) 29 4.2
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 29 4.2
SB_5338| Best HMM Match : rve (HMM E-Value=0.0034) 29 4.2
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 29 4.2
SB_58238| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025) 29 5.5
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_36311| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 28 7.3
SB_21532| Best HMM Match : DUF834 (HMM E-Value=5.9) 28 7.3
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 28 9.7
SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6) 28 9.7
>SB_50675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 60.9 bits (141), Expect = 1e-09
Identities = 26/35 (74%), Positives = 34/35 (97%)
Frame = +1
Query: 661 KVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMYG 765
+V+ PYSAEDAKGLLK+AIR+P+PVV+LE+E+MYG
Sbjct: 5 QVVSPYSAEDAKGLLKSAIREPNPVVVLENELMYG 39
>SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)
Length = 865
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 278 RRWRETRKSSFWERKSLNTMVPTKLQGVYGRNMVIKELSTHPSQRQDSPV 427
R+WRE+R + R LNT+ +KL+G + + E + +SPV
Sbjct: 566 RKWRESRAPNH-PRPDLNTLDESKLEGAWQSGTDLTERRKKAVKHVESPV 614
>SB_19945| Best HMM Match : TAFH (HMM E-Value=2.8)
Length = 250
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 5 TRPPFILRRGS--FAHLISFXPKLSSYLA---NKPPCWFRCCKNYLT 130
T PP + R S ++ PKL S A N+PP FRC KN LT
Sbjct: 186 TEPPLVAFRRSPNLRDILVKRPKLPSETALPXNQPPGAFRCGKNCLT 232
>SB_48887| Best HMM Match : PA28_alpha (HMM E-Value=6.2)
Length = 159
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 662 LRPGQWLYQAPKHWECCAATLEAAPLGPR--NTIGTG 558
LRP WL P H C AA + P GPR +T TG
Sbjct: 100 LRPKNWL-TCPDHGPCRAARSTSRPSGPRGPDTARTG 135
>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
Length = 1081
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 269 RSTRRWRETRKSSFWERKSLNTMVPTKLQGVY 364
R+ RRWR ++ R LNT+ +KL+G +
Sbjct: 654 RTPRRWRRESRAPNHPRPDLNTLGESKLEGAW 685
>SB_5338| Best HMM Match : rve (HMM E-Value=0.0034)
Length = 537
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 269 RSTRRWRETRKSSFWERKSLNTMVPTKLQGVYGRNMVIKE 388
R R WRE+R S R LNT+ +KL+G + +KE
Sbjct: 104 RLRRWWRESRAPSH-PRPDLNTLDESKLEGAWQSGTDLKE 142
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 357 PCNFV-GTIVLSDFLSQNEDFLVSLHLLVDRLI*SISYSHRLRSQS 223
P +F+ + +LSDFLS DFL S L D L S S S L S S
Sbjct: 1279 PSDFLTSSSLLSDFLSLPSDFLTSSSSLSDFLTSSSSLSDFLTSSS 1324
>SB_58238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 202 RSFATSKALASKPVTVRDALNQAIDEEMER 291
++F ALA PVT +++N + +EMER
Sbjct: 38 KNFDLEAALAKYPVTYEESMNTVLVQEMER 67
>SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025)
Length = 698
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 184 LTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGL 363
L L + TS A ++ VR+ L + + + R ++++ G + ++G+Y RG+
Sbjct: 293 LHSLLQEKALTSAAAKTREAKVREVLIRFTNRAIPRSTRIWLRGRVMVTHEGSYTDRRGI 352
>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/62 (19%), Positives = 24/62 (38%)
Frame = +1
Query: 538 YMSAGTVPVPIVFRGPNGAASSVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAI 717
Y+ + +F GP G + +G Y+ C ++ L+P D + +
Sbjct: 161 YLDENVIGGDTLFEGPYGQKKGHSVLSRTTYGTMYTRCTRIRTLLPRPPPDRRRTFRHEA 220
Query: 718 RD 723
R+
Sbjct: 221 RE 222
>SB_36311| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 869
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 278 RRWRETRKSSFWERKSLNTMVPTKLQGVY 364
RRWR ++ R LNT+ +KL+G +
Sbjct: 639 RRWRRESRAPIHPRPDLNTLGESKLEGAW 667
>SB_21532| Best HMM Match : DUF834 (HMM E-Value=5.9)
Length = 302
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 278 RRWRETRKSSFWERKSLNTMVPTKLQGVY 364
RRWR ++ R LNT+ +KL+G +
Sbjct: 67 RRWRRESRAPIHPRPDLNTLGESKLEGAW 95
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 256 ALNQAIDEEMER-DEKVFVLGEEVAQYDGAYKVTRGL 363
A+N+AI +E+E +EKVF +V + KVT+GL
Sbjct: 1039 AVNKAIMKEVEELEEKVFAASLQVKGWKLPAKVTKGL 1075
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/62 (22%), Positives = 33/62 (53%)
Frame = +1
Query: 145 KMALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEV 324
K+A + ++ + L RS+A + ++ L+ A++E ++RD+++F L +E
Sbjct: 200 KLAFSEAQPIIQAIKEL--RSYAGKEKKHFDIISPSQQLSDAVEEWLQRDDRIFGLRDEC 257
Query: 325 AQ 330
+
Sbjct: 258 VE 259
>SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)
Length = 569
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 5 TRPPFI-LRRGSFAHLISFXPKLSSYLA--NKPPCWFRCCKNYLT 130
T PP + RR I KL S + N+PP FRC KN LT
Sbjct: 359 TEPPLVAFRRSPNLRYILVKAKLPSDRSPTNQPPGAFRCGKNCLT 403
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,117,782
Number of Sequences: 59808
Number of extensions: 507003
Number of successful extensions: 1247
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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